ViewGene
Locus Name:
GeneID:
Location:

GeneID:5860
TrivialName: PA14_38650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38650
PAO1 Ortholog Locus:
Sequence Length:1347
Protein Length:448
Start: 3449226
Stop: 3447880
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphilum]
Identities = 96/293 (32%), Positives = 113/293 (38%), Gaps = 67/293 (22%)
Sequence:
ATGCCCAGCTCGACGCGTCGGTTGCGGACCATCTCCAGCACCTGCTCGTTGATCACGTCGTGCACCGCCACG
TTGACCCGCGGGTGGCGTTCGCGAAAGGTCTTCAAGACCAGCGGCAGCAGGTTGCCGGCGAAGGAGGGCATG
GCGGCGATGGAGACCTTGCCCAGTTGCAGGGTGAAGTGCTGGCGCAGCAATTCCTCGGTATTGTCCCAGTCG
GCCAGCAGGCGCAGCGCCAGCGGCAGCAGGGTCTCGCCCTCGGGGGTGAGGCTGACGCTGCGGGTGGTACGT
TCCAGCAGCGGACCGCCGAGGCTTTCCTCCAGGCTCTTGATCGCCAGGCTCAGGGCCGGCTGGGAGAGGTGC
AGGCGTTCGCCGGCCTGGGCGAAGCTGAGGCTCTGCGCCACGGCGAGGAAGGCGCGCAACTGCTTGACGGTC
ATTTATTTGTTTTTCTCATCAATGGATTGGAAAAACAAACTTAACAAATCAGTCCGCAGCGGAGAAGCTCTG
TGCGACCCGGCAGTCAGACTGCCGCACGCACAATCACAAGAGCCGGAAGAGGCACAGCAGCATGAGCGGACT
CGACAAGCGAGTAGGCAGTTACGAAGAGGCCCTCGAAGGCCTGACCGACGGCATGACCGTCCTCGCCGGGGG
CTTCGGCCTCTGCGGGATTCCCGAGAACCTGATCGCGGAAATCCGCCGGCGCGGGGTCAGGGACCTCACGGT
GGTCTCGAACAACTGCGGCGTCGACGGTTTCGGCCTCGGCGTGCTGCTGGAAGACCGGCAGATCCGCAAGAT
GATCGCCTCCTACGTCGGCGAGAACGCCCTGTTCGAGCAACAACTGCTCAGTGGCGAGCTGGAAGTCGAACT
GACCCCGCAAGGCTCGCTGGCCGAGAAGATCCGCGCCGGCGGCGCCGGCATCCCGGCCTTCTTCACCGCCAC
CGGCTACGGCACCCCGGTCGCCGAGGGCAAGGAGGCGCGCGAGTTCAATGGCCGCCACTACATCCTCGAGCC
GGCCATCACCGGCGACTTCGCCATCGTCAAGGGCTGGAAGGCCGACCATTTCGGCAACGTCGTCTATCGCCA
CACCGCGCAGAACTTCAACCCGCTGGTCGCCACCGCCGGGCGCATCACGGTGGTCGAGGTGGAGGAGATCGT
CGAGCCCGGCGAACTGGACCCGACGCAAATCCACACCCCCGGCATCTACGTCGACCGGATCATCCAGGGTCG
CTTCGAGAAACGCATCGAGAAACGCACGCTGCGCGCCTGACGGCGGCCGCTACAACGACAAGAGGTTTCCCC
AGATGGCACTTACCCGCGAACAGATGGCGCAGCGCGTGGCGCGCGAATTGA
Translation:
MPSSTRRLRTISSTCSLITSCTATLTRGWRSRKVFKTSGSRLPAKEGMAAMETLPSCRVKCWRSNSSVLSQS
ASRRSASGSRVSPSGVRLTLRVVRSSSGPPRLSSRLLIARLRAGWERCRRSPAWAKLRLCATARKARNCLTV
IYLFFSSMDWKNKLNKSVRSGEALCDPAVRLPHAQSQEPEEAQQHERTRQASRQLRRGPRRPDRRHDRPRRG
LRPLRDSREPDRGNPPARGQGPHGGLEQLRRRRFRPRRAAGRPADPQDDRLLRRRERPVRATTAQWRAGSRT
DPARLAGREDPRRRRRHPGLLHRHRLRHPGRRGQGGARVQWPPLHPRAGHHRRLRHRQGLEGRPFRQRRLSP
HRAELQPAGRHRRAHHGGRGGGDRRARRTGPDANPHPRHLRRPDHPGSLRETHRETHAARLTAAATTTRGFP
RWHLPANRWRSAWRAN*
AnnotationID:5861GeneID:5860
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 18:06:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11636




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28843




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48862How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1504685Stop: 1506031

          
Length: 1347


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCCAGCTCGACGCGTCGGTTGCGGACCATCTCCAGCACCTGCTCGTTGATCACGTCGTGCACCGCCACG 
TTGACCCGCGGGTGGCGTTCGCGAAAGGTCTTCAAGACCAGCGGCAGCAGGTTGCCGGCGAAGGAGGGCATG 
GCGGCGATGGAGACCTTGCCCAGTTGCAGGGTGAAGTGCTGGCGCAGCAATTCCTCGGTATTGTCCCAGTCG 
GCCAGCAGGCGCAGCGCCAGCGGCAGCAGGGTCTCGCCCTCGGGGGTGAGGCTGACGCTGCGGGTGGTACGT 
TCCAGCAGCGGACCGCCGAGGCTTTCCTCCAGGCTCTTGATCGCCAGGCTCAGGGCCGGCTGGGAGAGGTGC 
AGGCGTTCGCCGGCCTGGGCGAAGCTGAGGCTCTGCGCCACGGCGAGGAAGGCGCGCAACTGCTTGACGGTC 
ATTTATTTGTTTTTCTCATCAATGGATTGGAAAAACAAACTTAACAAATCAGTCCGCAGCGGAGAAGCTCTG 
TGCGACCCGGCAGTCAGACTGCCGCACGCACAATCACAAGAGCCGGAAGAGGCACAGCAGCATGAGCGGACT 
CGACAAGCGAGTAGGCAGTTACGAAGAGGCCCTCGAAGGCCTGACCGACGGCATGACCGTCCTCGCCGGGGG 
CTTCGGCCTCTGCGGGATTCCCGAGAACCTGATCGCGGAAATCCGCCGGCGCGGGGTCAGGGACCTCACGGT 
GGTCTCGAACAACTGCGGCGTCGACGGTTTCGGCCTCGGCGTGCTGCTGGAAGACCGGCAGATCCGCAAGAT 
GATCGCCTCCTACGTCGGCGAGAACGCCCTGTTCGAGCAACAACTGCTCAGTGGCGAGCTGGAAGTCGAACT 
GACCCCGCAAGGCTCGCTGGCCGAGAAGATCCGCGCCGGCGGCGCCGGCATCCCGGCCTTCTTCACCGCCAC 
CGGCTACGGCACCCCGGTCGCCGAGGGCAAGGAGGCGCGCGAGTTCAATGGCCGCCACTACATCCTCGAGCC 
GGCCATCACCGGCGACTTCGCCATCGTCAAGGGCTGGAAGGCCGACCATTTCGGCAACGTCGTCTATCGCCA 
CACCGCGCAGAACTTCAACCCGCTGGTCGCCACCGCCGGGCGCATCACGGTGGTCGAGGTGGAGGAGATCGT 
CGAGCCCGGCGAACTGGACCCGACGCAAATCCACACCCCCGGCATCTACGTCGACCGGATCATCCAGGGTCG 
CTTCGAGAAACGCATCGAGAAACGCACGCTGCGCGCCTGACGGCGGCCGCTACAACGACAAGAGGTTTCCCC 
AGATGGCACTTACCCGCGAACAGATGGCGCAGCGCGTGGCGCGCGAATTGA