ViewGene
Locus Name:
GeneID:
Location:

GeneID:5859
TrivialName: PA14_38670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38670
PAO1 Ortholog Locus:
Sequence Length:912
Protein Length:303
Start: 3449662
Stop: 3448751
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM34962.1| (AE011630) ankyrin-like protein [Xanthomonas axonopodis pv. citri str. 306]
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 5/144 (3%)
Sequence:
ATGCAGCAGCACGTCGCTGAGGGCCTGGGCGGCGGTGGACAGCTTGTGCTCGCTCAGCCGCAGCAGGCCGAC
CCGTCGCTGCACCTGCGGCGCGTAGAGCGGCAGGCAGCGCGCGCCGAGTTCCTGCATCTGCTGGATGCACAG
GGTCGGCACGGCGCTGACACCCAGTCCCTGGGCGACCATCCGCCCGACCGTGACCAGTTGGTGGCTCTCGAA
CGCCACCGGCAAGCGGCCGTGCTCGGCGGCCACGCTTTCTTCCAGGAGCAGGCGCACCGCCGAGGGGCGTTG
CAGGGTAATGAAGGGCTCGCCGAGCAGTTCGCGCCAACTGATCCGCTCCTGCCCGGACAGCGGCGAGCCGGT
CGGCACCACGGCGACGAAGCGGTCGCTGTAGAACGGGGTGAACTCGAGGTTTTCCAGGGACTCCGGCTCGAA
GGCGATGCCCAGCTCGACGCGTCGGTTGCGGACCATCTCCAGCACCTGCTCGTTGATCACGTCGTGCACCGC
CACGTTGACCCGCGGGTGGCGTTCGCGAAAGGTCTTCAAGACCAGCGGCAGCAGGTTGCCGGCGAAGGAGGG
CATGGCGGCGATGGAGACCTTGCCCAGTTGCAGGGTGAAGTGCTGGCGCAGCAATTCCTCGGTATTGTCCCA
GTCGGCCAGCAGGCGCAGCGCCAGCGGCAGCAGGGTCTCGCCCTCGGGGGTGAGGCTGACGCTGCGGGTGGT
ACGTTCCAGCAGCGGACCGCCGAGGCTTTCCTCCAGGCTCTTGATCGCCAGGCTCAGGGCCGGCTGGGAGAG
GTGCAGGCGTTCGCCGGCCTGGGCGAAGCTGAGGCTCTGCGCCACGGCGAGGAAGGCGCGCAACTGCTTGAC
GGTCATTTATTTGTTTTTCTCATCAATGGATTGGAAAAACAAACTTAA
Translation:
MQQHVAEGLGGGGQLVLAQPQQADPSLHLRRVERQAARAEFLHLLDAQGRHGADTQSLGDHPPDRDQLVALE
RHRQAAVLGGHAFFQEQAHRRGALQGNEGLAEQFAPTDPLLPGQRRAGRHHGDEAVAVERGELEVFQGLRLE
GDAQLDASVADHLQHLLVDHVVHRHVDPRVAFAKGLQDQRQQVAGEGGHGGDGDLAQLQGEVLAQQFLGIVP
VGQQAQRQRQQGLALGGEADAAGGTFQQRTAEAFLQALDRQAQGRLGEVQAFAGLGEAEALRHGEEGAQLLD
GHLFVFLINGLEKQT*
AnnotationID:5860GeneID:5859
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 18:06:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11634




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28841




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48861How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1504249Stop: 1505160

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCAGCAGCACGTCGCTGAGGGCCTGGGCGGCGGTGGACAGCTTGTGCTCGCTCAGCCGCAGCAGGCCGAC 
CCGTCGCTGCACCTGCGGCGCGTAGAGCGGCAGGCAGCGCGCGCCGAGTTCCTGCATCTGCTGGATGCACAG 
GGTCGGCACGGCGCTGACACCCAGTCCCTGGGCGACCATCCGCCCGACCGTGACCAGTTGGTGGCTCTCGAA 
CGCCACCGGCAAGCGGCCGTGCTCGGCGGCCACGCTTTCTTCCAGGAGCAGGCGCACCGCCGAGGGGCGTTG 
CAGGGTAATGAAGGGCTCGCCGAGCAGTTCGCGCCAACTGATCCGCTCCTGCCCGGACAGCGGCGAGCCGGT 
CGGCACCACGGCGACGAAGCGGTCGCTGTAGAACGGGGTGAACTCGAGGTTTTCCAGGGACTCCGGCTCGAA 
GGCGATGCCCAGCTCGACGCGTCGGTTGCGGACCATCTCCAGCACCTGCTCGTTGATCACGTCGTGCACCGC 
CACGTTGACCCGCGGGTGGCGTTCGCGAAAGGTCTTCAAGACCAGCGGCAGCAGGTTGCCGGCGAAGGAGGG 
CATGGCGGCGATGGAGACCTTGCCCAGTTGCAGGGTGAAGTGCTGGCGCAGCAATTCCTCGGTATTGTCCCA 
GTCGGCCAGCAGGCGCAGCGCCAGCGGCAGCAGGGTCTCGCCCTCGGGGGTGAGGCTGACGCTGCGGGTGGT 
ACGTTCCAGCAGCGGACCGCCGAGGCTTTCCTCCAGGCTCTTGATCGCCAGGCTCAGGGCCGGCTGGGAGAG 
GTGCAGGCGTTCGCCGGCCTGGGCGAAGCTGAGGCTCTGCGCCACGGCGAGGAAGGCGCGCAACTGCTTGAC 
GGTCATTTATTTGTTTTTCTCATCAATGGATTGGAAAAACAAACTTAA