ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5851

TrivialName: PA14_38940

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_38940

PAO1 Ortholog Locus:

Sequence Length: 981

Protein Length: 326

Start: 3470897

Stop: 3469917

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK94971.1|AF396970_6 (AF396970) VspB [Mycoplasma bovis] Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 10/151 (6%)

Sequence:

ATGGAATGCCAGGAGCAGCAGGGCGGCGAAGGCAAGGGCTCGGAGGAAGTTGCCGGCGCTGACCGCCAGCGG
ATCGCCGCCGCCGCGGCCGAGCAGGGTATAGAGGCCCCAGGCGAGGCCGGACAGGAGCATCAGCAGGGCACC
GCCCAGCGGCGGCGCGCTGGCTCCGGGGAGCAACAGGAACAGCAGGCCGCCCAGGGCCAGCAGGAAACCGAG
CAGCGCCTGTCCGCCCAGCCGTTCGCCGCGCAGCAGGCCGGCCAGCAGCAGGGTGACCTGCACCGCGCCGAA
CAGCAGCAGCGCGCCGGTGCCGGCGTCCAGCTGCACGTAGGCGTAGGAGAACGCGGCCGCGTAGACGAACAG
CGCCGCCGCCCCGCGCCAGCCGCCGCGCGCGGGCGTGGCCGGGCGCCGGCGCAGATGCAGCAGGACGGCGAG
CATGAGGGCGCCGGAGAAGAGACGCAGGGCGGTGAAGCTGACCGCGTCGATGGCGGTGTCCTTCAGCGCCGC
GCGGCAGAGCAGCGAATTGCCGGCGAAGGCCAGCATCGCCAGGACAGTGAGCAGCAGGGTACGGCGGTCGGG
CATCGGCGGGTCTCAGCGGCGCAGGTAGGCGGCGAAGTCGATGTCGCCGGCGCTGAGGATCGCCTGGACCCG
GTTGTGTACCTTGAGCTTGCGCAGGATCGCCGAGACGTGCGCCTTCACCGTGGTCTCGGCGATGTCCAGGTT
GTAGGCGATCTGCTTGTTCGACTCGCCCTTGGTCATCCGCTCCAGCACCAGCAGCTGCTTGCGGGTCAGGGC
CTGGAGCAGTTCCGGGGAGATGCCGTGTTCTTCGTGGCCGCTGCGTCGCGGCGAACTCTTCTGGGTGCGGAT
CACGTCCGAGGGCAGGTAGACGTTGCCGTTGAGGATCTGCTCGATGGCTTCGGTCATCTGCGCGCGTGGCGA
GGACTTGGTGATGAAGCCCACCGCGCCGTAGGTGATGGCCTGTAG

Translation:

MECQEQQGGEGKGSEEVAGADRQRIAAAAAEQGIEAPGEAGQEHQQGTAQRRRAGSGEQQEQQAAQGQQETE
QRLSAQPFAAQQAGQQQGDLHRAEQQQRAGAGVQLHVGVGERGRVDEQRRRPAPAAARGRGRAPAQMQQDGE
HEGAGEETQGGEADRVDGGVLQRRAAEQRIAGEGQHRQDSEQQGTAVGHRRVSAAQVGGEVDVAGAEDRLDP
VVYLELAQDRRDVRLHRGLGDVQVVGDLLVRLALGHPLQHQQLLAGQGLEQFRGDAVFFVAAASRRTLLGAD
HVRGQVDVAVEDLLDGFGHLRAWRGLGDEAHRAVGDGL*

AnnotationID:5852 GeneID:5851

AnnotatorUID: diggins

Modification Date/Time: 2004-06-23 20:08:58

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:11620

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28825

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32735

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5851_cdd.html

URL:

GC ORFID: `48853`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1483014`	Stop: `1483994`
Length: `981`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGAATGCCAGGAGCAGCAGGGCGGCGAAGGCAAGGGCTCGGAGGAAGTTGCCGGCGCTGACCGCCAGCGG ATCGCCGCCGCCGCGGCCGAGCAGGGTATAGAGGCCCCAGGCGAGGCCGGACAGGAGCATCAGCAGGGCACC GCCCAGCGGCGGCGCGCTGGCTCCGGGGAGCAACAGGAACAGCAGGCCGCCCAGGGCCAGCAGGAAACCGAG CAGCGCCTGTCCGCCCAGCCGTTCGCCGCGCAGCAGGCCGGCCAGCAGCAGGGTGACCTGCACCGCGCCGAA CAGCAGCAGCGCGCCGGTGCCGGCGTCCAGCTGCACGTAGGCGTAGGAGAACGCGGCCGCGTAGACGAACAG CGCCGCCGCCCCGCGCCAGCCGCCGCGCGCGGGCGTGGCCGGGCGCCGGCGCAGATGCAGCAGGACGGCGAG CATGAGGGCGCCGGAGAAGAGACGCAGGGCGGTGAAGCTGACCGCGTCGATGGCGGTGTCCTTCAGCGCCGC GCGGCAGAGCAGCGAATTGCCGGCGAAGGCCAGCATCGCCAGGACAGTGAGCAGCAGGGTACGGCGGTCGGG CATCGGCGGGTCTCAGCGGCGCAGGTAGGCGGCGAAGTCGATGTCGCCGGCGCTGAGGATCGCCTGGACCCG GTTGTGTACCTTGAGCTTGCGCAGGATCGCCGAGACGTGCGCCTTCACCGTGGTCTCGGCGATGTCCAGGTT GTAGGCGATCTGCTTGTTCGACTCGCCCTTGGTCATCCGCTCCAGCACCAGCAGCTGCTTGCGGGTCAGGGC CTGGAGCAGTTCCGGGGAGATGCCGTGTTCTTCGTGGCCGCTGCGTCGCGGCGAACTCTTCTGGGTGCGGAT CACGTCCGAGGGCAGGTAGACGTTGCCGTTGAGGATCTGCTCGATGGCTTCGGTCATCTGCGCGCGTGGCGA GGACTTGGTGATGAAGCCCACCGCGCCGTAGGTGATGGCCTGTAG