ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5846

TrivialName: PA14_39170

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39170

PAO1 Ortholog Locus:

Sequence Length: 1335

Protein Length: 444

Start: 3490717

Stop: 3489383

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05348.1|AE004622_10 (AE004622) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 67/109 (61%), Positives = 69/109 (63%), Gaps = 20/109 (18%)

Sequence:

GTGGCTGTTCAATCCGATCACCGTCGCCCTGGCGCTGGTGGTGGGCGGGGTGGTCATGCTCTGGGCCGAGCG
CCGGAAGCATGTGATCCACGCCGAACACGTCGACGACATGACCTGGAAGGACGCCCTGAAGATCGGCTGTGC
CCAGTGCCTGGCGATGGTCCCCGGCACCTCGCGGTCCGGCGCGACCATCATCGGCGGCCTGCTGTTCGGCCT
TTCGCGCAAGGCGGCCACCGAGTTCTCGTTCTTCCTGGCGATGCCGACCATGGTCGGCGCCGCGGTCTATTC
CGGCTACAAGTACCGCGACCTGTTCCGCCCCGAAGACCTGCCGGTGTTCGCCGTCGGCTTCGTCACCTCGTT
CGTCTTCGCCATGGTGGCGGTGCGTGCCTTGCTGAAGTTCATCGGCAACCACAGCTACGCGGCTTTCGCCTG
GTATCGGATCGCCTTCGGGCTGCTGATCCTGGCGACCTGGCAATTCCACCTGATCGACTGGAGCACCGCCGG
CGAAATGTGAGGCCCGGGAACCAGGTAAAAGGCGCGGCGCGAGCCGCGTTTTTTTTCGCCTGGCCGCCGCGG
GTGGCTAGAATGCAGCGCGAAACGGGTAGCGAGCGAGTGGATATGGAAAAGCCGGGCATGATCAGCCGCTGG
TACGACGACAAGGGCTTCGGCTTCATCCTGCCGAAGACCGGCGGGGAAGAAGTCTTCCTGCATATCTCCGCG
TTCCGCGGTGACCGCCGTCCCcCGCCAGGGCGACCAGGTGTGGTTCCTCGCCAGCCAGGACGCCCAGGGCCG
CCTGCGCGCCGAGAGGGCGCGGCTGGACGCGCTGACCCTCGACCCGCCGACTGTCCGCCGTGGCGCCCAGGC
GCCGGTGACGCGGGCCCAGGCACGGCCGGCGCCGACTCCGCCGAGCGCGTTGCAGCGCCCGTTGGCGAAGCT
GCTGGTCCTGCTGATCCTCTGCGTGCTGCCGGCCGCCGGCGCCTGGCGGATGTACCTGGACGGACAGGCCCT
CTGGCCGCTGCTGGCCTATCCGCTGGCCAGCCTGCTCGCATTCGCCCTCTACTGGCAGGACAAGCGCAGCGC
CGCACGCGGCGACTGGCGTACCCCGGAGGTCCGCCTGCACCTGTTCGAGCTGCTTGGCGGCTGGCCTGGCGC
GCTGGTCGCGCAGCAGGCGTTCCGCCACAAGACCCGCAAGCTCTCGTTCCAACTGGTGTTCTGGGGCATCGT
CCTGCTGCACCAGCTGTTCTGGCTCGACAGCCTGCTCGGCGGGCGCCTGTCCGCCGCGCTGTTGCAGTGGAT
CGGCTGAACGGCGCGGCTCACTCGCGGGCGCGGCGGTAG

Translation:

MAVQSDHRRPGAGGGRGGHALGRAPEACDPRRTRRRHDLEGRPEDRLCPVPGDGPRHLAVRRDHHRRPAVRP
FAQGGHRVLVLPGDADHGRRRGLFRLQVPRPVPPRRPAGVRRRLRHLVRLRHGGGACLAEVHRQPQLRGFRL
VSDRLRAADPGDLAIPPDRLEHRRRNVRPGNQVKGAARAAFFFAWPPRVARMQRETGSERVDMEKPGMISRW
YDDKGFGFILPKTGGEEVFLHISAFRGDRRPPPGRPGVVPRQPGRPGPPARREGAAGRADPRPADCPPWRPG
AGDAGPGTAGADSAERVAAPVGEAAGPADPLRAAGRRRLADVPGRTGPLAAAGLSAGQPARIRPLLAGQAQR
RTRRLAYPGGPPAPVRAAWRLAWRAGRAAGVPPQDPQALVPTGVLGHRPAAPAVLARQPARRAPVRRAVAVD
RLNGAAHSRARR*

AnnotationID:5847 GeneID:5846

AnnotatorUID: diggins

Modification Date/Time: 2004-06-24 20:08:36

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15710

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28815

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32755

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5846_cdd.html

URL:

Homologs By Global Alignment

Gene ID:5846

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

7922 PA1960_tr translation of PA1960 513 19.10 21.44 342 281.0

197792 gb|AAG05348.1|AE004622_10 (AE004622) hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1] 513 19.10 21.44 342 281.0

GC ORFID: `48848`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1463194`	Stop: `1464528`
Length: `1335`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA1960 translation of PA1960`	Homolog Bit Score `112.0`
Other Homologs: `t_PA1960 translation of PA1960 (BLASTP 112)`
GC ORF Sequence
GTGGCTGTTCAATCCGATCACCGTCGCCCTGGCGCTGGTGGTGGGCGGGGTGGTCATGCTCTGGGCCGAGCG CCGGAAGCATGTGATCCACGCCGAACACGTCGACGACATGACCTGGAAGGACGCCCTGAAGATCGGCTGTGC CCAGTGCCTGGCGATGGTCCCCGGCACCTCGCGGTCCGGCGCGACCATCATCGGCGGCCTGCTGTTCGGCCT TTCGCGCAAGGCGGCCACCGAGTTCTCGTTCTTCCTGGCGATGCCGACCATGGTCGGCGCCGCGGTCTATTC CGGCTACAAGTACCGCGACCTGTTCCGCCCCGAAGACCTGCCGGTGTTCGCCGTCGGCTTCGTCACCTCGTT CGTCTTCGCCATGGTGGCGGTGCGTGCCTTGCTGAAGTTCATCGGCAACCACAGCTACGCGGCTTTCGCCTG GTATCGGATCGCCTTCGGGCTGCTGATCCTGGCGACCTGGCAATTCCACCTGATCGACTGGAGCACCGCCGG CGAAATGTGAGGCCCGGGAACCAGGTAAAAGGCGCGGCGCGAGCCGCGTTTTTTTTCGCCTGGCCGCCGCGG GTGGCTAGAATGCAGCGCGAAACGGGTAGCGAGCGAGTGGATATGGAAAAGCCGGGCATGATCAGCCGCTGG TACGACGACAAGGGCTTCGGCTTCATCCTGCCGAAGACCGGCGGGGAAGAAGTCTTCCTGCATATCTCCGCG TTCCGCGGTGACCGCCGTCCCcCGCCAGGGCGACCAGGTGTGGTTCCTCGCCAGCCAGGACGCCCAGGGCCG CCTGCGCGCCGAGAGGGCGCGGCTGGACGCGCTGACCCTCGACCCGCCGACTGTCCGCCGTGGCGCCCAGGC GCCGGTGACGCGGGCCCAGGCACGGCCGGCGCCGACTCCGCCGAGCGCGTTGCAGCGCCCGTTGGCGAAGCT GCTGGTCCTGCTGATCCTCTGCGTGCTGCCGGCCGCCGGCGCCTGGCGGATGTACCTGGACGGACAGGCCCT CTGGCCGCTGCTGGCCTATCCGCTGGCCAGCCTGCTCGCATTCGCCCTCTACTGGCAGGACAAGCGCAGCGC CGCACGCGGCGACTGGCGTACCCCGGAGGTCCGCCTGCACCTGTTCGAGCTGCTTGGCGGCTGGCCTGGCGC GCTGGTCGCGCAGCAGGCGTTCCGCCACAAGACCCGCAAGCTCTCGTTCCAACTGGTGTTCTGGGGCATCGT CCTGCTGCACCAGCTGTTCTGGCTCGACAGCCTGCTCGGCGGGCGCCTGTCCGCCGCGCTGTTGCAGTGGAT CGGCTGAACGGCGCGGCTCACTCGCGGGCGCGGCGGTAG