ViewGene

Locus Name:
GeneID:
Location:

GeneID:5843
TrivialName: PA14_39340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39340
PAO1 Ortholog Locus:
Sequence Length:2166
Protein Length:721
Start: 3501273
Stop: 3503438
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB51502.1| (AP003005) unknown protein [Mesorhizobium loti]
Identities = 127/374 (33%), Positives = 175/374 (46%), Gaps = 26/374 (6%)
Sequence:
GTGGCGCGCCAGCGCCGGCAGGTTGCCCAGGGCCAGGTTGGCGCTGATCGACTGGTCCAGCAGCAGGCCCTC
GCCCTTGCGGTCCTCGGTGATCAGCGCCACCCCCTGGCGCACCGAGTCGGCCGGCGAACGCAGGCTCAGGCG
CTGCGGCGGATCGCCGAGCAGGACCTGCCCACCGTCGGCGCGGTCGGCGCCGTAGATCAGGCGCAACAATTC
GGTGCGCCCGGAGCCGATCAGTCCGGAAATGCCGAAGATCTCCCCCGCGCGCACCTCGAACGACACCTCATG
CACCTTGCCGCGCCGGCTCAACCGCTCCACCCGCAGCAGCGGCGCACCGGTCTGCCGTGGGCCCAGGTCGAA
GCGCTCGCCCAGCTCGCGGCCGACCATCAGGGTCACCAGTTGGTCGGCGTCGTAGCGCTCGATCGGCTCGAC
GCAGACCAGGCGGCCATCGCGCAACACCGCGATGCGCTGCGAAATCCGCGCCAGTTCCTCCAGTCGATGGGA
GATGTAGACGATCGCCACGCCGCGTTCGCGCAGCCGCTCGACCTGCTCGAAGAGCATGTCCACTTCGCGCGC
GGTAAGCATCGCCGTGGGTTCGTCGAGGATCAGCAAGCGGCAGTCGCCGATCAGGTTGCGGGCGATCTCGAC
CATCTGCTGGTGGCCGATACCGAGGTCGCCGACCAGCGTGTCGGGATCGATCGCCTCCAGGCCGACCTGGGC
CATCGCCTCGCGGGCCGCCGCGCGCAGGCGCCGACGGTCGATCCAGCCGGCGCGCCGGGGCAGGTCGTGGAG
GAACAGGTTCTCCGCCACCGACAGGGTCGGCAGCAGGTTCAGTTCCTGCATCACCATGCGCACGCCCAGCGC
CTCGGCCTCGCGGCGGCTAGCGGGGGCGTAAGGCCGGCCGAGGAGCTCCAGGCTGCCGGCGCCGGGACGTTC
CAGGCCGCCGACGATCTTCGACAGGGTGCTCTTGCCGGCGCCGTTCTCGCCGGTCAGGGCCAGCACCTCGCC
GCCGAACAGTTGCAGGTCGATCTCCGCCAGCACCGGCTGCGCGTAggTCTTGCCGACCCCGCGGATGCTCAG
CAGCGGCAATGCGTCGCTAGACATGGGAAGGCTCCATCGGACGGCTCAGGGCGCGGTCACCAACTCGACAGG
CGTCTCGACCACGCCGTCCTTCTCATGTTCCGGGGCTTGCCCAGCAAGCAGCTTGAGCGCGGTCTGGATACC
GAACACCGCCTGCTTCGCGGCGAACTGGTCGGCAGTAGCCAGCACCCGGCCATCCTGGAGCATCGGCTTGAT
CGCCTGGATATTGTCGTAGCCGACCACCTTCACCTGCCCGGCGCGGCCCGCCGCGCGCACCGCCGATACCGC
GCCGAGGGCCATGCTGTCGTTGCCGGCGAGCAGCGCCTTGAGGTCCGGATGCTCGTTGAGCATCGCCGAAGC
CACCGCGTTGCCCTTCTCGATTTCCCAGTTGCCCGACTGCAAGGAGACGATCTTCATCCCCGCCGCGTCCAT
CGCATCCTTGAAGCCGGCGGTGCGCTGCTGGGCATTGGTGGTCGTGGAGACCCCTTCGATGATGCCGACCTC
GTCACCGGCCTTCAGTCGCTTCGCCAGGTACTCGCCGACCAGCCGCGCGCCCTTGCGGTTGTCGGGACCGAC
GAAGGGCACGCCGATCTTCTTCGCCTGCAGCACCTGCGGGTCGAAGCGGTTGTCGATGTTGACCACCACGAT
GCCGGCGTCCAGCGCTTTCTTCACCACCGGCACCAGCGCCTTGGAATCGGCCGGCGCGATCACCAGTGCGTC
GACCCCGGAAACGATCATCTGCTCGACGATGCGGATCTGGCTGGAGGTATCGGTCTCGTCCTTGATGCCGTT
GGAAACCAGTTCGAACCGGTCGGCATGCTCCTTCTGGTAGGCCTTGGCGCCGTCCTCCATGGTCAGGAAGAA
CTCGTTCGCCAGCGACTTCATCACCAGCGCGATCCTGGGCTTCTCGGGAGTTTCCGCGTGGACGGCGGACAG
GGGCAGGAACGAGGAACAGGCAGTCAGCACAACGGCAGCCAACAGGCGCCGGGAAGCGACCCGCTTCATGGT
GTATCCTCCAGCTTTTCTTATCGTTGTATTGAGGCTTTTCCAGGAGATTATCCAGACGCAAACGTTTGCGTT
AGGTGA
Translation:
MARQRRQVAQGQVGADRLVQQQALALAVLGDQRHPLAHRVGRRTQAQALRRIAEQDLPTVGAVGAVDQAQQF
GAPGADQSGNAEDLPRAHLERHLMHLAAPAQPLHPQQRRTGLPWAQVEALAQLAADHQGHQLVGVVALDRLD
ADQAAIAQHRDALRNPRQFLQSMGDVDDRHAAFAQPLDLLEEHVHFARGKHRRGFVEDQQAAVADQVAGDLD
HLLVADTEVADQRVGIDRLQADLGHRLAGRRAQAPTVDPAGAPGQVVEEQVLRHRQGRQQVQFLHHHAHAQR
LGLAAASGGVRPAEELQAAGAGTFQAADDLRQGALAGAVLAGQGQHLAAEQLQVDLRQHRLRVGLADPADAQ
QRQCVARHGKAPSDGSGRGHQLDRRLDHAVLLMFRGLPSKQLERGLDTEHRLLRGELVGSSQHPAILEHRLD
RLDIVVADHLHLPGAARRAHRRYRAEGHAVVAGEQRLEVRMLVEHRRSHRVALLDFPVARLQGDDLHPRRVH
RILEAGGALLGIGGRGDPFDDADLVTGLQSLRQVLADQPRALAVVGTDEGHADLLRLQHLRVEAVVDVDHHD
AGVQRFLHHRHQRLGIGRRDHQCVDPGNDHLLDDADLAGGIGLVLDAVGNQFEPVGMLLLVGLGAVLHGQEE
LVRQRLHHQRDPGLLGSFRVDGGQGQERGTGSQHNGSQQAPGSDPLHGVSSSFSYRCIEAFPGDYPDANVCV
R*
AnnotationID:5844GeneID:5843
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 13:01:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15706
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28810
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48845How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1452638Stop: 1450473
Length: 2166
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGCGCGCCAGCGCCGGCAGGTTGCCCAGGGCCAGGTTGGCGCTGATCGACTGGTCCAGCAGCAGGCCCTC
GCCCTTGCGGTCCTCGGTGATCAGCGCCACCCCCTGGCGCACCGAGTCGGCCGGCGAACGCAGGCTCAGGCG
CTGCGGCGGATCGCCGAGCAGGACCTGCCCACCGTCGGCGCGGTCGGCGCCGTAGATCAGGCGCAACAATTC
GGTGCGCCCGGAGCCGATCAGTCCGGAAATGCCGAAGATCTCCCCCGCGCGCACCTCGAACGACACCTCATG
CACCTTGCCGCGCCGGCTCAACCGCTCCACCCGCAGCAGCGGCGCACCGGTCTGCCGTGGGCCCAGGTCGAA
GCGCTCGCCCAGCTCGCGGCCGACCATCAGGGTCACCAGTTGGTCGGCGTCGTAGCGCTCGATCGGCTCGAC
GCAGACCAGGCGGCCATCGCGCAACACCGCGATGCGCTGCGAAATCCGCGCCAGTTCCTCCAGTCGATGGGA
GATGTAGACGATCGCCACGCCGCGTTCGCGCAGCCGCTCGACCTGCTCGAAGAGCATGTCCACTTCGCGCGC
GGTAAGCATCGCCGTGGGTTCGTCGAGGATCAGCAAGCGGCAGTCGCCGATCAGGTTGCGGGCGATCTCGAC
CATCTGCTGGTGGCCGATACCGAGGTCGCCGACCAGCGTGTCGGGATCGATCGCCTCCAGGCCGACCTGGGC
CATCGCCTCGCGGGCCGCCGCGCGCAGGCGCCGACGGTCGATCCAGCCGGCGCGCCGGGGCAGGTCGTGGAG
GAACAGGTTCTCCGCCACCGACAGGGTCGGCAGCAGGTTCAGTTCCTGCATCACCATGCGCACGCCCAGCGC
CTCGGCCTCGCGGCGGCTAGCGGGGGCGTAAGGCCGGCCGAGGAGCTCCAGGCTGCCGGCGCCGGGACGTTC
CAGGCCGCCGACGATCTTCGACAGGGTGCTCTTGCCGGCGCCGTTCTCGCCGGTCAGGGCCAGCACCTCGCC
GCCGAACAGTTGCAGGTCGATCTCCGCCAGCACCGGCTGCGCGTAggTCTTGCCGACCCCGCGGATGCTCAG
CAGCGGCAATGCGTCGCTAGACATGGGAAGGCTCCATCGGACGGCTCAGGGCGCGGTCACCAACTCGACAGG
CGTCTCGACCACGCCGTCCTTCTCATGTTCCGGGGCTTGCCCAGCAAGCAGCTTGAGCGCGGTCTGGATACC
GAACACCGCCTGCTTCGCGGCGAACTGGTCGGCAGTAGCCAGCACCCGGCCATCCTGGAGCATCGGCTTGAT
CGCCTGGATATTGTCGTAGCCGACCACCTTCACCTGCCCGGCGCGGCCCGCCGCGCGCACCGCCGATACCGC
GCCGAGGGCCATGCTGTCGTTGCCGGCGAGCAGCGCCTTGAGGTCCGGATGCTCGTTGAGCATCGCCGAAGC
CACCGCGTTGCCCTTCTCGATTTCCCAGTTGCCCGACTGCAAGGAGACGATCTTCATCCCCGCCGCGTCCAT
CGCATCCTTGAAGCCGGCGGTGCGCTGCTGGGCATTGGTGGTCGTGGAGACCCCTTCGATGATGCCGACCTC
GTCACCGGCCTTCAGTCGCTTCGCCAGGTACTCGCCGACCAGCCGCGCGCCCTTGCGGTTGTCGGGACCGAC
GAAGGGCACGCCGATCTTCTTCGCCTGCAGCACCTGCGGGTCGAAGCGGTTGTCGATGTTGACCACCACGAT
GCCGGCGTCCAGCGCTTTCTTCACCACCGGCACCAGCGCCTTGGAATCGGCCGGCGCGATCACCAGTGCGTC
GACCCCGGAAACGATCATCTGCTCGACGATGCGGATCTGGCTGGAGGTATCGGTCTCGTCCTTGATGCCGTT
GGAAACCAGTTCGAACCGGTCGGCATGCTCCTTCTGGTAGGCCTTGGCGCCGTCCTCCATGGTCAGGAAGAA
CTCGTTCGCCAGCGACTTCATCACCAGCGCGATCCTGGGCTTCTCGGGAGTTTCCGCGTGGACGGCGGACAG
GGGCAGGAACGAGGAACAGGCAGTCAGCACAACGGCAGCCAACAGGCGCCGGGAAGCGACCCGCTTCATGGT
GTATCCTCCAGCTTTTCTTATCGTTGTATTGAGGCTTTTCCAGGAGATTATCCAGACGCAAACGTTTGCGTT
AGGTGA