ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5840

TrivialName: PA14_39400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39400

PAO1 Ortholog Locus:

Sequence Length: 1605

Protein Length: 534

Start: 3505751

Stop: 3507355

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK62517.1| (AY034092) putative hydroxyproline-rich protein [Micrococcus sp. 28] Identities = 81/259 (31%), Positives = 95/259 (36%), Gaps = 55/259 (21%)

Sequence:

GTGGTCGGCGACATTGGTGGTCTCGCGGATGAACAGCGCGTCGTACTCGGCGATCCGCGAATAGTCCTTGCG
CTCGATCAGGTCGACGTCGATGCCGAGGCTGCGGCCGACCCGCACGAAGTTCTTCAGCGCTTTGGCATCGGA
CGGCGGGAACGCCTCGCCGGGGTCGTGGAGGATCGCCAGGTCGTAGCGGAACGGCTTGCGCGAACGCGGCTT
GCGCCAGATCTGCCGGCTGAAGTTGTCCAGGGCGTTGGCGAAGAGGTCCTCCTGATCCTCGCGCAGCTTGTG
GATGGCGCCGGGCTTGATGCCCTCGATGTGCCAGGTGCGGTTGCGCTTGAACTCCACCAGCAGCAACGGGCA
GGGAAACGCCTCGAACAACTGTCGCGCCAGGTCCTGCAACGGCTCGATGTCGGTACGGCCGAAATACAGGGT
CAGGGTGAAACCATCGGTGCTGCCGTAGGGGTGCGCGGCCAGGGCCTTGTCCAGGGTGCGGTCGAGGTCCTC
CAGGACCAGGCTGTACAGCGACTTCCTGGCCAGCTCGCTGATGGTCCGCACCGAGGGGATCACCTTGTGCCC
GCGCGCCTCGGCGAGCAGCGAGCAGTAGTAGCCATGGCGCAGGTACTTGTAGTGCCGGCACAGGTTGATCAC
CTGGACCCGCTTGCCAGTGTCGTCGTCGATGGGCAGTTCCAGGTATTCCTGGGCGGTGACCACATCCTCGCT
GGGGTAATAGGACGTCCAGTCTTCCTTGCGTTCCACGATGATGAACAGCTTGCTCACGACACCTCCCGGGGG
GACAGCGAAACCACGGCGCATTCGGAACCGGCTTGCCGGCGCACGCATCCCGGCCAATACTCGGCGGGAATC
CCTTGCGAAACCGCTCTATGGCGCCTGCCAGCAAACCGAAGCGTACAGCACCCATTACAGCACGCCCGCGCG
GAAGTTCCCGCCCGCGGCCGTGGAGACCGCTATGAACCTGACCCTCCGCCCGGCCGGCACGGACGACCTGTC
CGCCCTGGTCGAGCTGGAAAACCGCTGCTTCGACTACGATCGCCTGTCCCGCCGCAACTTCCAGTGGATGCT
CACCCGCGCCCACGCCAGCCTGACGGTAGCCGAGGGCGACGGCGGCGTGCTCGGCTACGCCCTGGTGCTGTT
CCACGAAGGCACCTCGCTGGCCCGCCTCTACTCCATCGCCATCGACCCGCGCGCCCGCGGCATCGGCCTCGG
CCAGAAGCTGCTGGAAGCCGCCGAGCAGGCCGCGCGGGACAACGACCGCGCCTACATGCGCCTGGAAGTGCG
CCCGGACAACCGTGGCGCCATCGCCCTCTACGAGCGCAACGGCTACCGTCCCTTCGCCACCGTGCGCGACTA
CTACGAGGACCACAGCGAAGCGCTGCGCTTCGAGAAACGCATCCGCAACCCCGGCCACGACCAGCGCCGCCA
CGTGCCCTTCTACCGGCAGACCACCGATTTCACCTGCGGCCCGGCCTGCCTGCTGATGGCCATGGGCGCGCT
GCAACCGGAGCGCCAGTTGACCCGCCGCGAGGAACTGCGCCTGTGGCGCGAGGCGACCACCATCTACATGAC
CGCCGGGCACGGCGGCTGTAG

Translation:

MVGDIGGLADEQRVVLGDPRIVLALDQVDVDAEAAADPHEVLQRFGIGRRERLAGVVEDRQVVAERLARTRL
APDLPAEVVQGVGEEVLLILAQLVDGAGLDALDVPGAVALELHQQQRAGKRLEQLSRQVLQRLDVGTAEIQG
QGETIGAAVGVRGQGLVQGAVEVLQDQAVQRLPGQLADGPHRGDHLVPARLGEQRAVVAMAQVLVVPAQVDH
LDPLASVVVDGQFQVFLGGDHILAGVIGRPVFLAFHDDEQLAHDTSRGDSETTAHSEPACRRTHPGQYSAGI
PCETALWRLPANRSVQHPLQHARAEVPARGRGDRYEPDPPPGRHGRPVRPGRAGKPLLRLRSPVPPQLPVDA
HPRPRQPDGSRGRRRRARLRPGAVPRRHLAGPPLLHRHRPARPRHRPRPEAAGSRRAGRAGQRPRLHAPGSA
PGQPWRHRPLRAQRLPSLRHRARLLRGPQRSAALRETHPQPRPRPAPPRALLPADHRFHLRPGLPADGHGRA
ATGAPVDPPRGTAPVARGDHHLHDRRARRL*

AnnotationID:5841 GeneID:5840

AnnotatorUID: diggins

Modification Date/Time: 2004-06-25 15:03:41

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15700

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28804

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32769

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5840_cdd.html

URL:

GC ORFID: `48842`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1448160`	Stop: `1446556`
Length: `1605`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGTCGGCGACATTGGTGGTCTCGCGGATGAACAGCGCGTCGTACTCGGCGATCCGCGAATAGTCCTTGCG CTCGATCAGGTCGACGTCGATGCCGAGGCTGCGGCCGACCCGCACGAAGTTCTTCAGCGCTTTGGCATCGGA CGGCGGGAACGCCTCGCCGGGGTCGTGGAGGATCGCCAGGTCGTAGCGGAACGGCTTGCGCGAACGCGGCTT GCGCCAGATCTGCCGGCTGAAGTTGTCCAGGGCGTTGGCGAAGAGGTCCTCCTGATCCTCGCGCAGCTTGTG GATGGCGCCGGGCTTGATGCCCTCGATGTGCCAGGTGCGGTTGCGCTTGAACTCCACCAGCAGCAACGGGCA GGGAAACGCCTCGAACAACTGTCGCGCCAGGTCCTGCAACGGCTCGATGTCGGTACGGCCGAAATACAGGGT CAGGGTGAAACCATCGGTGCTGCCGTAGGGGTGCGCGGCCAGGGCCTTGTCCAGGGTGCGGTCGAGGTCCTC CAGGACCAGGCTGTACAGCGACTTCCTGGCCAGCTCGCTGATGGTCCGCACCGAGGGGATCACCTTGTGCCC GCGCGCCTCGGCGAGCAGCGAGCAGTAGTAGCCATGGCGCAGGTACTTGTAGTGCCGGCACAGGTTGATCAC CTGGACCCGCTTGCCAGTGTCGTCGTCGATGGGCAGTTCCAGGTATTCCTGGGCGGTGACCACATCCTCGCT GGGGTAATAGGACGTCCAGTCTTCCTTGCGTTCCACGATGATGAACAGCTTGCTCACGACACCTCCCGGGGG GACAGCGAAACCACGGCGCATTCGGAACCGGCTTGCCGGCGCACGCATCCCGGCCAATACTCGGCGGGAATC CCTTGCGAAACCGCTCTATGGCGCCTGCCAGCAAACCGAAGCGTACAGCACCCATTACAGCACGCCCGCGCG GAAGTTCCCGCCCGCGGCCGTGGAGACCGCTATGAACCTGACCCTCCGCCCGGCCGGCACGGACGACCTGTC CGCCCTGGTCGAGCTGGAAAACCGCTGCTTCGACTACGATCGCCTGTCCCGCCGCAACTTCCAGTGGATGCT CACCCGCGCCCACGCCAGCCTGACGGTAGCCGAGGGCGACGGCGGCGTGCTCGGCTACGCCCTGGTGCTGTT CCACGAAGGCACCTCGCTGGCCCGCCTCTACTCCATCGCCATCGACCCGCGCGCCCGCGGCATCGGCCTCGG CCAGAAGCTGCTGGAAGCCGCCGAGCAGGCCGCGCGGGACAACGACCGCGCCTACATGCGCCTGGAAGTGCG CCCGGACAACCGTGGCGCCATCGCCCTCTACGAGCGCAACGGCTACCGTCCCTTCGCCACCGTGCGCGACTA CTACGAGGACCACAGCGAAGCGCTGCGCTTCGAGAAACGCATCCGCAACCCCGGCCACGACCAGCGCCGCCA CGTGCCCTTCTACCGGCAGACCACCGATTTCACCTGCGGCCCGGCCTGCCTGCTGATGGCCATGGGCGCGCT GCAACCGGAGCGCCAGTTGACCCGCCGCGAGGAACTGCGCCTGTGGCGCGAGGCGACCACCATCTACATGAC CGCCGGGCACGGCGGCTGTAG