ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5838

TrivialName: PA14_39450

AnnotatorUID: diggins

Modification Date/Time: 2006-04-23 09:09:22

LocusName: PA14_39450

PAO1 Ortholog Locus:

Sequence Length: 1848

Protein Length: 615

Start: 3508552

Stop: 3510399

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 170/563 (30%), Positives = 192/563 (34%), Gaps = 89/563 (15%)

Sequence:

ATGGAAGGACGAGGCCCGCCAGCGCTTCTACTACACGCCCCAGGGCACTCTGGTGAAGGGCCTGCACTACGA
CTGGTTCACCGCCCTCGAACTGCCCTTCTCCGAAGAACCCTTCGCCGCCCCCGAATACCTCGCCCGCTTCGG
CTTCCTCGTCGATCCGCAGCAGAAGGCCAGCGACCTCAACCCCGGCAACCTGCCGGTGGGCTTCAGCCAGCA
CCGCGACGAGAAGACCGGCACCCGCTACCTGGACATCACCTGCGCCGCCTGCCACACCGGCGAACTGCGCTA
CCAGGGCAAGTCGCTACGCATCGACGGCGGTGCCGCCATGCATTCCATCGCCGCCACCGTGCCGACCCTGCG
CGGCGGCGCCTTCGGCCAGGCGCTCGGCGCGAGCATGGCCGCCACCTACTACAACCCGTTCAAGTTCAACCG
CTTCGCCAGGAAAGTCCTCGGCGAACGCTACGAACAGGACAAGTCGCAACTGCGCGCCGACTTCAAGGCCGT
GCTCGACACCCTCCTGCGCACCGCCTGGAACGACACCCGCCGCCACCTCTACCCCACCGAGGAAGGCCCCGG
CCGCACCGACGCCTTCGGGCGCATCGCCAACAGCGTCTTCGGCGATGCCATCGACCCGGGCAACTACCGCGT
CGCCAACGCCCCGGTGAGCTATCCGCAGGTCTGGGACATCTGGAAATTCGACTGGGTGCAATGGAACGGCTC
GGCCATGCAGCCGATGGCGCGCAACATCGGCGAGGCCCTCGGCGTCGGCGCGCGCCTGCAGATCTTCGACGA
GCACGGCCAGCCGCTGCGGGGCGAGCAGCGCTACGCCTCCAGCGTACGCCTGCACGACCTGCACGCCCTGGA
AGAAACCCTGCAACAGCTGAAACCGCCGACCTGGCCGGAAGACCTCTTCGGCCGCATCGACCTGCAACGCGC
CTCCCAGGGCCGCGCCCTGTTCGAAGCCAACTGCGCCTTCTGCCATGCACCCAAGGTGCAACCGGCGGAATA
CGCCGCCCCCGGACGCAATCCCGAGTGGCGCATGCACATGGTGCCGACCGAGGTGATCGGCACCGACCCGAC
CACCGCCGACAACATCGCCGACCACCGCTACGACCTGCGCAAGCTCGGCTGGAGCGTCGACGAACTGGCGCG
GATGAACGTCCAGCTGATCGGCGCCGATCCGCAGCAACTCGACCTCTCGCAACTGTCCTCGGCCAAGGGCCT
GGCCTACATCACCGCCTTCGTCGAGCAGCGCGCCTACCGGGACGCCGGCATCCCGCCGGAACAGCAGAAGAC
CATGAACGGCTTCGACCTACCGATCGGCGTACAGGAACTGCGCGCCTACAAGGCCCGCCCGCTGGACGGCGT
CTGGGCGACCCCGCCGTTCCTGCACAACGGCTCGGTGCCCAACCTGTTCCAACTGCTCTCCCCGGCCGCCGA
ACGCTCGCCGCAGTTCTACGTCGGCACCTTCGAATTCGATCCGAAATTCGTTGGATTCCGCACCGAGAAATT
CCCCGGCGGCTTCCTCCTCGACACCCGTCTCACCGGCAACCGCAACAGCGGCCACGAATTCCGCGACGGCTG
CCGGCAGAACGGCGTGATCGGCCGCGCCCTCAGCCCGGAAGAACGCTGGGCGCTGGTGGAATACCTGAAGGT
GCTCGGCAACCCCGAGTTCGAGCGCCGCCTGGTCCCGGCCCAGACCCCACCCTGGACGCCCGGCCCGAAATG
CCCGGCGCCGGAGCAACGGACCGCGCAACGCTGAACCTGGGAAATGGAGAAGCGCGAGGCATGGCGCCGCCG
CCCCTCTCCACCCCGAGCAGCCCCTCTCCCTTCAGGGGGGACGCCTAG

Translation:

MEGRGPPALLLHAPGHSGEGPALRLVHRPRTALLRRTLRRPRIPRPLRLPRRSAAEGQRPQPRQPAGGLQPA
PRREDRHPLPGHHLRRLPHRRTALPGQVATHRRRCRHAFHRRHRADPARRRLRPGARREHGRHLLQPVQVQP
LRQESPRRTLRTGQVATARRLQGRARHPPAHRLERHPPPPLPHRGRPRPHRRLRAHRQQRLRRCHRPGQLPR
RQRPGELSAGLGHLEIRLGAMERLGHAADGAQHRRGPRRRRAPADLRRARPAAAGRAALRLQRTPARPARPG
RNPATAETADLAGRPLRPHRPATRLPGPRPVRSQLRLLPCTQGATGGIRRPRTQSRVAHAHGADRGDRHRPD
HRRQHRRPPLRPAQARLERRRTGADERPADRRRSAATRPLATVLGQGPGLHHRLRRAARLPGRRHPAGTAED
HERLRPTDRRTGTARLQGPPAGRRLGDPAVPAQRLGAQPVPTALPGRRTLAAVLRRHLRIRSEIRWIPHREI
PRRLPPRHPSHRQPQQRPRIPRRLPAERRDRPRPQPGRTLGAGGIPEGARQPRVRAPPGPGPDPTLDARPEM
PGAGATDRATLNLGNGEARGMAPPPLSTPSSPSPFRGDA*

AnnotationID:5839 GeneID:5838

AnnotatorUID: diggins

Modification Date/Time: 2006-04-23 09:09:44

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: INACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:11596

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28800

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32770

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5838_cdd.html

URL:

GC ORFID: `48840`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1445359`	Stop: `1443512`
Length: `1848`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGAAGGACGAGGCCCGCCAGCGCTTCTACTACACGCCCCAGGGCACTCTGGTGAAGGGCCTGCACTACGA CTGGTTCACCGCCCTCGAACTGCCCTTCTCCGAAGAACCCTTCGCCGCCCCCGAATACCTCGCCCGCTTCGG CTTCCTCGTCGATCCGCAGCAGAAGGCCAGCGACCTCAACCCCGGCAACCTGCCGGTGGGCTTCAGCCAGCA CCGCGACGAGAAGACCGGCACCCGCTACCTGGACATCACCTGCGCCGCCTGCCACACCGGCGAACTGCGCTA CCAGGGCAAGTCGCTACGCATCGACGGCGGTGCCGCCATGCATTCCATCGCCGCCACCGTGCCGACCCTGCG CGGCGGCGCCTTCGGCCAGGCGCTCGGCGCGAGCATGGCCGCCACCTACTACAACCCGTTCAAGTTCAACCG CTTCGCCAGGAAAGTCCTCGGCGAACGCTACGAACAGGACAAGTCGCAACTGCGCGCCGACTTCAAGGCCGT GCTCGACACCCTCCTGCGCACCGCCTGGAACGACACCCGCCGCCACCTCTACCCCACCGAGGAAGGCCCCGG CCGCACCGACGCCTTCGGGCGCATCGCCAACAGCGTCTTCGGCGATGCCATCGACCCGGGCAACTACCGCGT CGCCAACGCCCCGGTGAGCTATCCGCAGGTCTGGGACATCTGGAAATTCGACTGGGTGCAATGGAACGGCTC GGCCATGCAGCCGATGGCGCGCAACATCGGCGAGGCCCTCGGCGTCGGCGCGCGCCTGCAGATCTTCGACGA GCACGGCCAGCCGCTGCGGGGCGAGCAGCGCTACGCCTCCAGCGTACGCCTGCACGACCTGCACGCCCTGGA AGAAACCCTGCAACAGCTGAAACCGCCGACCTGGCCGGAAGACCTCTTCGGCCGCATCGACCTGCAACGCGC CTCCCAGGGCCGCGCCCTGTTCGAAGCCAACTGCGCCTTCTGCCATGCACCCAAGGTGCAACCGGCGGAATA CGCCGCCCCCGGACGCAATCCCGAGTGGCGCATGCACATGGTGCCGACCGAGGTGATCGGCACCGACCCGAC CACCGCCGACAACATCGCCGACCACCGCTACGACCTGCGCAAGCTCGGCTGGAGCGTCGACGAACTGGCGCG GATGAACGTCCAGCTGATCGGCGCCGATCCGCAGCAACTCGACCTCTCGCAACTGTCCTCGGCCAAGGGCCT GGCCTACATCACCGCCTTCGTCGAGCAGCGCGCCTACCGGGACGCCGGCATCCCGCCGGAACAGCAGAAGAC CATGAACGGCTTCGACCTACCGATCGGCGTACAGGAACTGCGCGCCTACAAGGCCCGCCCGCTGGACGGCGT CTGGGCGACCCCGCCGTTCCTGCACAACGGCTCGGTGCCCAACCTGTTCCAACTGCTCTCCCCGGCCGCCGA ACGCTCGCCGCAGTTCTACGTCGGCACCTTCGAATTCGATCCGAAATTCGTTGGATTCCGCACCGAGAAATT CCCCGGCGGCTTCCTCCTCGACACCCGTCTCACCGGCAACCGCAACAGCGGCCACGAATTCCGCGACGGCTG CCGGCAGAACGGCGTGATCGGCCGCGCCCTCAGCCCGGAAGAACGCTGGGCGCTGGTGGAATACCTGAAGGT GCTCGGCAACCCCGAGTTCGAGCGCCGCCTGGTCCCGGCCCAGACCCCACCCTGGACGCCCGGCCCGAAATG CCCGGCGCCGGAGCAACGGACCGCGCAACGCTGAACCTGGGAAATGGAGAAGCGCGAGGCATGGCGCCGCCG CCCCTCTCCACCCCGAGCAGCCCCTCTCCCTTCAGGGGGGACGCCTAG