ViewGene

Locus Name:
GeneID:
Location:

GeneID:5836
TrivialName: PA14_39510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39510
PAO1 Ortholog Locus:
Sequence Length:2352
Protein Length:783
Start: 3516987
Stop: 3519338
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK25017.1| (AE005968) hypothetical protein [Caulobacter crescentus CB15]
Identities = 133/507 (26%), Positives = 177/507 (34%), Gaps = 116/507 (22%)
Sequence:
TTGCGCAGGCTGCCGGGCTCAGCCGAGCAACTTGTCGACGGTCAGCGGGAAGTCGCGCAGGCGGCGGCCGGT
GGCGTGGTACACGGCATTCGCCACTGCGGCGGCGACGCCGACGATGCCTATTTCGCCGACGCCCTTGGAGCC
CAGTTCGTTAACGATATCGTCGGGTTCGTCGACGAAGATCACCTCGATATCGCCAATATCGGCGTTAACCGG
GATGTGGTACTCGGCGAGGTTGTGGTTCATGCAGCGGCCCAGCGCATGGTCGACCTGGGTTTCCTCCTGCAA
GGCCATGCCCAGGCCCCAGACCACCCCGCCGAGTATCTGGCTGCGAGCGGTCTTCGGGTTGATCACCCACCC
CGCCGCGACCGCGCTGACCACCCGGCTCACACGCAGGGTACCGAGGGCTTCATCGATCCGCACCTCGACGAA
TACCGCCGAATGGGTCGCGGTGGCGTAGCCTTTGCGCCGCGCCGAGGGTTCAGCTTCCACCTCCACCTGCAA
CGCGTCTTCCGGCAGCCCTTGCAGCAGGTCGGCCAGGGCGTATCGCGTATCGCCCGCTTCCAGATGGCCACG
GCATATGCGGAAGCGCTCTTCGGCGGCGCCGGCCAGCTCCGGATGGCGGGCCCTGGCATGGGCGACCAGGGC
CTGGCGCAGGCGCAGGCAGGCCAGGCGGACGGCGGAACCGACCGACGAGACGGTGAACGAGCCGCCCTGCAA
TGGAGCCTTGGGCAACGCACTGTCGCCAAGCTGGAAGCGCACCTCTTCCGGCGCCATGCCAGCGGCGTCGGC
GGCGATCTGGGTCATCACCGTGTAGGTGCCGGTGCCGATATCCGTGGTCGCGCTGGCCACCCGCAGCAGGCC
GTCCGCCTCCAGCCGCGCCCTCGCGCTGGCCTTGCTCTGCATGGCCTCCCAGACGCCGCCGGCCATGCCCCA
GCCGAGCAACTGGCGCCCTTCGCTCATGCTCCGTGGCCGTGGGTCGCGGGCCTGCCAACCGAAGCGCCGGGC
GCCCTCCTCGTAGCAGGCCAGCAGCGCCTTGCTGGAGTACGGCTTGTCCTCGTTGCCGTTGCGCTCGGCGAA
GTTGAACCGGCGCAGCGCGATGGGGTCCATGCCGAGCCGCACCGCCAGTTCGTCCATCGCGCATTCCAGCCC
GATCAATCCCAGCGCCGCGCCGGGGGCGCGCATGTCCAGCGGGGTATAGACGTCCAGCGGCACCAGACGGTA
GGCCAGGGAAAGGTTCTCGCAGCGATAGAGCATGCCGCTCCACTCCACCACGTGCTCGGTGAAGTCTTCGAA
GCGCGAGGTCTGCGCTGTCGCCTGGTGGCCCAGCGCAAGCAGGCGCCCCTCGGCATCGGCGCCCAGTTGCAG
GCGCTGCAGGGTGCGCGGCCGGTAGCCGAAGGTGAACATCTGCTGGCGGGTCAGCACTACGCGCACCGACCG
CCGCAGTTGCAGCGCCGCCATCACCGCCAGGGTCAACTGGTATTGCGGACGCAGGCCGGAGCCGAAGGCGCC
GCCGACGTAGGCGGCACAGACCCTTACCTTGTCGGCGGGCAGGCCGAAGACCTTTTGCAGGTAGGCCTGGCT
GTTCTGCGTCCCCTGGGTCTTGTCGTGCACCAGCAGGCTGCCGTCGGGCTGGACGATGACCGTGGACGCGTG
CGGTTCCATGGGATTGTGGTGCTCGATCGGCGTGCTGTAGCTGGCCTCGACCCGAATCGGCGCGGCGCGGTA
GGCGGTGTAGAAATCGCCGCGCTCGGCGGGCAGTTCGGCGGGAGCCTCATGGGCCTGTTCGAGGGCGGCCAG
CAGGTCGGTCTGGTGCGGCTCGGGCTCGATATCGATGCGCAGCAGCGAGCCCGCGTAGCGGGCCAGTTCCAG
GCTCCGTGCCAGGACCAGGGCAAGGGGCTGGCCGCTGTACAGGACGCGGTCGTCGAACAGCGGGCGGAAGGG
TTCGCCTTCGGCGGCATCGGCGTCCTTGTAGGGCTCGTCGTCGCCCGCCATCGGCGGCCGGTTCAGGTGATG
CAGTACCGCGACCACCCCGGGTACCGCCAGGGCCGCCGCACAGTCGATGCCGCGCACCCGGCCGCGGGCGAC
GTCGCTGCTGACCACGCTGCCGTGGAGCAGGTCGGCGGCAGGATATTCGGCGGCGTAACGAGCCTGGCCGGT
GACCTTGGCTGGCCCGTCGACGCGATCCAGGGCTTGCCCGGTGCTGTGTGGCAGGCTGCTCATTGGCCGATC
CCTCCCGAGTGGGCTTCTTCCAGTGCGCGAACGATGGCGTTGCGCGCCAATCCGATCTTGAAGGCGTTGTGG
GCCAGCGGCCTGGCGTCACGCAGCAGCGCTTCGGCGAAGCGGACATAG
Translation:
MRRLPGSAEQLVDGQREVAQAAAGGVVHGIRHCGGDADDAYFADALGAQFVNDIVGFVDEDHLDIANIGVNR
DVVLGEVVVHAAAQRMVDLGFLLQGHAQAPDHPAEYLAASGLRVDHPPRRDRADHPAHTQGTEGFIDPHLDE
YRRMGRGGVAFAPRRGFSFHLHLQRVFRQPLQQVGQGVSRIARFQMATAYAEALFGGAGQLRMAGPGMGDQG
LAQAQAGQADGGTDRRDGERAALQWSLGQRTVAKLEAHLFRRHASGVGGDLGHHRVGAGADIRGRAGHPQQA
VRLQPRPRAGLALHGLPDAAGHAPAEQLAPFAHAPWPWVAGLPTEAPGALLVAGQQRLAGVRLVLVAVALGE
VEPAQRDGVHAEPHRQFVHRAFQPDQSQRRAGGAHVQRGIDVQRHQTVGQGKVLAAIEHAAPLHHVLGEVFE
ARGLRCRLVAQRKQAPLGIGAQLQALQGARPVAEGEHLLAGQHYAHRPPQLQRRHHRQGQLVLRTQAGAEGA
ADVGGTDPYLVGGQAEDLLQVGLAVLRPLGLVVHQQAAVGLDDDRGRVRFHGIVVLDRRAVAGLDPNRRGAV
GGVEIAALGGQFGGSLMGLFEGGQQVGLVRLGLDIDAQQRARVAGQFQAPCQDQGKGLAAVQDAVVEQRAEG
FAFGGIGVLVGLVVARHRRPVQVMQYRDHPGYRQGRRTVDAAHPAAGDVAADHAAVEQVGGRIFGGVTSLAG
DLGWPVDAIQGLPGAVWQAAHWPIPPEWASSSARTMALRANPILKALWASGLASRSSASAKRT*
AnnotationID:5837GeneID:5836
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15697
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28797
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48838How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1436924Stop: 1434573
Length: 2352
Start Codon: TTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGCAGGCTGCCGGGCTCAGCCGAGCAACTTGTCGACGGTCAGCGGGAAGTCGCGCAGGCGGCGGCCGGT
GGCGTGGTACACGGCATTCGCCACTGCGGCGGCGACGCCGACGATGCCTATTTCGCCGACGCCCTTGGAGCC
CAGTTCGTTAACGATATCGTCGGGTTCGTCGACGAAGATCACCTCGATATCGCCAATATCGGCGTTAACCGG
GATGTGGTACTCGGCGAGGTTGTGGTTCATGCAGCGGCCCAGCGCATGGTCGACCTGGGTTTCCTCCTGCAA
GGCCATGCCCAGGCCCCAGACCACCCCGCCGAGTATCTGGCTGCGAGCGGTCTTCGGGTTGATCACCCACCC
CGCCGCGACCGCGCTGACCACCCGGCTCACACGCAGGGTACCGAGGGCTTCATCGATCCGCACCTCGACGAA
TACCGCCGAATGGGTCGCGGTGGCGTAGCCTTTGCGCCGCGCCGAGGGTTCAGCTTCCACCTCCACCTGCAA
CGCGTCTTCCGGCAGCCCTTGCAGCAGGTCGGCCAGGGCGTATCGCGTATCGCCCGCTTCCAGATGGCCACG
GCATATGCGGAAGCGCTCTTCGGCGGCGCCGGCCAGCTCCGGATGGCGGGCCCTGGCATGGGCGACCAGGGC
CTGGCGCAGGCGCAGGCAGGCCAGGCGGACGGCGGAACCGACCGACGAGACGGTGAACGAGCCGCCCTGCAA
TGGAGCCTTGGGCAACGCACTGTCGCCAAGCTGGAAGCGCACCTCTTCCGGCGCCATGCCAGCGGCGTCGGC
GGCGATCTGGGTCATCACCGTGTAGGTGCCGGTGCCGATATCCGTGGTCGCGCTGGCCACCCGCAGCAGGCC
GTCCGCCTCCAGCCGCGCCCTCGCGCTGGCCTTGCTCTGCATGGCCTCCCAGACGCCGCCGGCCATGCCCCA
GCCGAGCAACTGGCGCCCTTCGCTCATGCTCCGTGGCCGTGGGTCGCGGGCCTGCCAACCGAAGCGCCGGGC
GCCCTCCTCGTAGCAGGCCAGCAGCGCCTTGCTGGAGTACGGCTTGTCCTCGTTGCCGTTGCGCTCGGCGAA
GTTGAACCGGCGCAGCGCGATGGGGTCCATGCCGAGCCGCACCGCCAGTTCGTCCATCGCGCATTCCAGCCC
GATCAATCCCAGCGCCGCGCCGGGGGCGCGCATGTCCAGCGGGGTATAGACGTCCAGCGGCACCAGACGGTA
GGCCAGGGAAAGGTTCTCGCAGCGATAGAGCATGCCGCTCCACTCCACCACGTGCTCGGTGAAGTCTTCGAA
GCGCGAGGTCTGCGCTGTCGCCTGGTGGCCCAGCGCAAGCAGGCGCCCCTCGGCATCGGCGCCCAGTTGCAG
GCGCTGCAGGGTGCGCGGCCGGTAGCCGAAGGTGAACATCTGCTGGCGGGTCAGCACTACGCGCACCGACCG
CCGCAGTTGCAGCGCCGCCATCACCGCCAGGGTCAACTGGTATTGCGGACGCAGGCCGGAGCCGAAGGCGCC
GCCGACGTAGGCGGCACAGACCCTTACCTTGTCGGCGGGCAGGCCGAAGACCTTTTGCAGGTAGGCCTGGCT
GTTCTGCGTCCCCTGGGTCTTGTCGTGCACCAGCAGGCTGCCGTCGGGCTGGACGATGACCGTGGACGCGTG
CGGTTCCATGGGATTGTGGTGCTCGATCGGCGTGCTGTAGCTGGCCTCGACCCGAATCGGCGCGGCGCGGTA
GGCGGTGTAGAAATCGCCGCGCTCGGCGGGCAGTTCGGCGGGAGCCTCATGGGCCTGTTCGAGGGCGGCCAG
CAGGTCGGTCTGGTGCGGCTCGGGCTCGATATCGATGCGCAGCAGCGAGCCCGCGTAGCGGGCCAGTTCCAG
GCTCCGTGCCAGGACCAGGGCAAGGGGCTGGCCGCTGTACAGGACGCGGTCGTCGAACAGCGGGCGGAAGGG
TTCGCCTTCGGCGGCATCGGCGTCCTTGTAGGGCTCGTCGTCGCCCGCCATCGGCGGCCGGTTCAGGTGATG
CAGTACCGCGACCACCCCGGGTACCGCCAGGGCCGCCGCACAGTCGATGCCGCGCACCCGGCCGCGGGCGAC
GTCGCTGCTGACCACGCTGCCGTGGAGCAGGTCGGCGGCAGGATATTCGGCGGCGTAACGAGCCTGGCCGGT
GACCTTGGCTGGCCCGTCGACGCGATCCAGGGCTTGCCCGGTGCTGTGTGGCAGGCTGCTCATTGGCCGATC
CCTCCCGAGTGGGCTTCTTCCAGTGCGCGAACGATGGCGTTGCGCGCCAATCCGATCTTGAAGGCGTTGTGG
GCCAGCGGCCTGGCGTCACGCAGCAGCGCTTCGGCGAAGCGGACATAG