ViewGene

Locus Name:
GeneID:
Location:

GeneID:5826
TrivialName: PA14_39920
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39920
PAO1 Ortholog Locus:
Sequence Length:333
Protein Length:110
Start: 3559191
Stop: 3558859
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GID5825 (PA14_39930) and GID5826 (PA14_39920) replaced by GID7411 (PA14_39925). Homology: gb|AAG07600.1|AE004838_4 (AE004838) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1]
Identities = 110/110 (100%), Positives = 110/110 (100%)
Sequence:
ATGCGCGCCAGTCCGGCCGACCGCGaggTGGTCGAGGAGCTGGCGCCGGGGCCGGACGACTGGCTGCTGACC
AAGTGGCGCTACAGCGCCTTCTTCCACTCCGACCTGCTCCAGCGGATGCGCGCCGCCGGCCGCGACCAGTTG
GTGCTGTGCGGCGTATACGCCCACGTCGGGGTGCTGATCTCCACGGTCGACGCCTACTCCAACGACATCCAG
CCGTTCCTGGTGGCCGACGCCATCGCCGACTTCAGCGAGGCGCACCACCGCATGGCCCTGGAATACGCCGCC
AGCCGCTGCGCGATGGTGGTCACCACCGACGAGGTGCTGGAATGA
Translation:
MRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQ
PFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE*
AnnotationID:5827GeneID:5826
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 16:04:39
Gene Name:
Confidence Code:5
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:
Homology:
POSSIBLE SEQUENCING ERROR?  Matches 2nd half of phzD2 gene.
Structural Features:
Genomic Context:
Comment:
GID5825 (PA14_39930) and GID5826 (PA14_39920) replaced by GID7411 (PA14_39925).
ReferenceID:11574
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28778
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5826

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7920 PA4213_tr translation of PA4213 207 53.14 53.14 97 569.0
7921 PA1902_tr translation of PA1902 207 53.14 53.14 97 569.0
197749 gb|AAG07600.1|AE004838_4 (AE004838) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1] 207 53.14 53.14 97 569.0
197750 gb|AAG05291.1|AE004616_5 (AE004616) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1] 207 53.14 53.14 97 569.0
197751 gb|AAC64487.1| (AF005404) PhzD [Pseudomonas aeruginosa] 207 53.14 53.14 97 569.0
GC ORFID: 48828How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1394720Stop: 1395052
Length: 333
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4213 translation of PA4213Homolog Bit Score 223.0
Other Homologs: t_PA4213 translation of PA4213 (BLASTP 223), t_PA1902 translation of PA1902 (BLASTP 223)
GC ORF Sequence
ATGCGCGCCAGTCCGGCCGACCGCGaggTGGTCGAGGAGCTGGCGCCGGGGCCGGACGACTGGCTGCTGACC
AAGTGGCGCTACAGCGCCTTCTTCCACTCCGACCTGCTCCAGCGGATGCGCGCCGCCGGCCGCGACCAGTTG
GTGCTGTGCGGCGTATACGCCCACGTCGGGGTGCTGATCTCCACGGTCGACGCCTACTCCAACGACATCCAG
CCGTTCCTGGTGGCCGACGCCATCGCCGACTTCAGCGAGGCGCACCACCGCATGGCCCTGGAATACGCCGCC
AGCCGCTGCGCGATGGTGGTCACCACCGACGAGGTGCTGGAATGA