ViewGene
Locus Name:
GeneID:
Location:

GeneID:5825
TrivialName: PA14_39930
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39930
PAO1 Ortholog Locus:
Sequence Length:360
Protein Length:119
Start: 3559482
Stop: 3559122
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GID5825 (PA14_39930) and GID5826 (PA14_39920) replaced by GID7411 (PA14_39925). Homology: gb|AAG07600.1|AE004838_4 (AE004838) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1]
Identities = 90/95 (94%), Positives = 92/95 (96%)
Sequence:
ATGAGCGGCATTCCCGAAATCACCGCCTATCCCTTGCCGACCGCCCAGCAGctGCCGGCCAACCTGGCGCGC
TggagcCTgaaGCcgcGGcGcgcGgtgctGCTGGTGcacgacaTGCAGCGcTACTTCCTGCGCCCGCTGCCc
gagagcCTGCGCGcCGGgctGgtgGCCAACgccgCGCGgCTGcgccGCTGgtgcgtcgagcAGGgcgTgcag
atcgccTAcaccGCCCAGCCGGGCAGcATGACcgaggagcagcgcGGCCTGCTCAggactTCTGGGGGCCGG
GCATGCGCGCCAGTCCGGCCGACCGCGaggTGGTCGAGGAGCTGGCGCCGGGGCCGGACGACTGGCTGCTGA
Translation:
MSGIPEITAYPLPTAQQLPANLARWSLKPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQ
IAYTAQPGSMTEEQRGLLRTSGGRACAPVRPTARWSRSWRRGRTTGC*
AnnotationID:5826GeneID:5825
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 16:04:08
Gene Name:
Confidence Code:5
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
POSSIBLE SEQUENCING ERROR?  Matches 1st half of phzD2 gene.






 
Structural Features:






   
Genomic Context:






   
Comment:
GID5825 (PA14_39930) and GID5826 (PA14_39920) replaced by GID7411 (PA14_39925).


















    ReferenceID:11572




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28776




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5825
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7918
                           PA4213_tr
                           translation of PA4213
                           207
                           47.82
                           48.79
                           88
                           454.0
     

     
     
7919
                           PA1902_tr
                           translation of PA1902
                           207
                           47.82
                           48.79
                           88
                           454.0
     

     
     
197743
                           gb|AAG07600.1|AE004838_4
                           (AE004838) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1]
                           207
                           47.82
                           48.79
                           88
                           454.0
     

     
     
197744
                           gb|AAG05291.1|AE004616_5
                           (AE004616) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1]
                           207
                           47.82
                           48.79
                           88
                           454.0
     

     
     
197745
                           gb|AAC64487.1|
                           (AF005404) PhzD [Pseudomonas aeruginosa]
                           207
                           47.82
                           48.79
                           88
                           454.0
     

     






      

          
GC ORFID: 48827How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1394430Stop: 1394789

          
Length: 360


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4213 translation of PA4213Homolog Bit Score 182.0

          
Other Homologs:  t_PA4213 translation of PA4213 (BLASTP 182), t_PA1902 translation of PA1902 (BLASTP 182)

          
GC ORF Sequence

           
ATGAGCGGCATTCCCGAAATCACCGCCTATCCCTTGCCGACCGCCCAGCAGctGCCGGCCAACCTGGCGCGC 
TggagcCTgaaGCcgcGGcGcgcGgtgctGCTGGTGcacgacaTGCAGCGcTACTTCCTGCGCCCGCTGCCc 
gagagcCTGCGCGcCGGgctGgtgGCCAACgccgCGCGgCTGcgccGCTGgtgcgtcgagcAGGgcgTgcag 
atcgccTAcaccGCCCAGCCGGGCAGcATGACcgaggagcagcgcGGCCTGCTCAggactTCTGGGGGCCGG 
GCATGCGCGCCAGTCCGGCCGACCGCGaggTGGTCGAGGAGCTGGCGCCGGGGCCGGACGACTGGCTGCTGA