ViewGene
Locus Name:
GeneID:
Location:

GeneID:5824
TrivialName: PA14_39940
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39940
PAO1 Ortholog Locus:
Sequence Length:315
Protein Length:104
Start: 3559793
Stop: 3559479
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:TRUE
Comments:
GID5823 (PA14_39950) and GID5824 (PA14_39940) replaced by GID7410 (PA14_39945). Homology: gb|AAG07599.1|AE004838_3 (AE004838) phenazine biosynthesis protein PhzC [Pseudomonas aeruginosa PAO1]
Identities = 102/104 (98%), Positives = 103/104 (99%)
Sequence:
ATGCACGGCAACACCATCGTCGCGCCCTGCGGCAACAAGACCCGCCTGGTGCGCAGCATCGCCGAGGAGGTG
GCGGCGTTCCGCCTGGCGGTGTCCGGCTCCGGCGGCGTGGCCGCCGGGCTGCAcntggAGACCACCCCGGAC
GACGTCACCGAGTGCGTCGCCGATTCCAGCGGCCTGCACCAGGTCAGCCGGCACTACACCAGCCTCTGCGAT
CCGCGGCTGAACCCCTGGCAGGCGCTCAGCGCGGTGATGGCCTGGGCCGGCGCAGAAGCGATCCCGAGCGCA
ACCTTCCCCCTGGAGACCgtgGcATGA
Translation:
MHGNTIVAPCGNKTRLVRSIAEEVAAFRLAVSGSGGVAAGLHXETTPDDVTECVADSSGLHQVSRHYTSLCD
PRLNPWQALSAVMAWAGAEAIPSATFPLETVA*
AnnotationID:4GeneID:5824
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 16:04:42
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
POSSIBLE SEQUENCING ERROR?  Matches 2nd half of phzC2 gene.






 
Structural Features:






   
Genomic Context:






   
Comment:
GID5823 (PA14_39950) and GID5824 (PA14_39940) replaced by GID7410 (PA14_39945).


















    ReferenceID:11570




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28774




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5824
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7916
                           PA4212_tr
                           translation of PA4212
                           405
                           25.18
                           25.43
                           301
                           532.0
     

     
     
7917
                           PA1901_tr
                           translation of PA1901
                           405
                           25.18
                           25.43
                           301
                           532.0
     

     
     
197735
                           gb|AAG07599.1|AE004838_3
                           (AE004838) phenazine biosynthesis protein PhzC [Pseudomonas aeruginosa PAO1]
                           405
                           25.18
                           25.43
                           301
                           532.0
     

     
     
197736
                           gb|AAG05290.1|AE004616_4
                           (AE004616) phenazine biosynthesis protein PhzC [Pseudomonas aeruginosa PAO1]
                           405
                           25.18
                           25.43
                           301
                           532.0
     

     
     
197737
                           gb|AAC64491.1|
                           (AF005404) PhzC [Pseudomonas aeruginosa]
                           405
                           25.18
                           25.43
                           301
                           532.0
     

     






      

          
GC ORFID: 48826How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1394119Stop: 1394433

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4212 translation of PA4212Homolog Bit Score 209.0

          
Other Homologs:  t_PA4212 translation of PA4212 (BLASTP 209), t_PA1901 translation of PA1901 (BLASTP 209)

          
GC ORF Sequence

           
ATGCACGGCAACACCATCGTCGCGCCCTGCGGCAACAAGACCCGCCTGGTGCGCAGCATCGCCGAGGAGGTG 
GCGGCGTTCCGCCTGGCGGTGTCCGGCTCCGGCGGCGTGGCCGCCGGGCTGCAcntggAGACCACCCCGGAC 
GACGTCACCGAGTGCGTCGCCGATTCCAGCGGCCTGCACCAGGTCAGCCGGCACTACACCAGCCTCTGCGAT 
CCGCGGCTGAACCCCTGGCAGGCGCTCAGCGCGGTGATGGCCTGGGCCGGCGCAGAAGCGATCCCGAGCGCA 
ACCTTCCCCCTGGAGACCgtgGcATGA