ViewGene
Locus Name:
GeneID:
Location:

GeneID:5821
TrivialName: PA14_40090
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 18:06:09
LocusName:PA14_40090
PAO1 Ortholog Locus:
Sequence Length:432
Protein Length:143
Start: 3572273
Stop: 3572704
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69693.1|AE016605_3 (AE016789) hypothetical protein [Pseudomonas putida KT2440]
Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Sequence:
ATGCGCAGTTGGACTGCGCCGCCGGCGAATGATTCCCAGGCCCCGCGCGGCGCCTGCCGCAGCCAGCACTGG
CCAGCCGGCGCGTCTGCCAGTAGTCTGTCCGCCGCGCTGGCGACGCCGGCCCCACGCCAACTGGAGCAAGAC
ATGTACCGAGACACCGTGACCCTCACCGTCAGCGCCGAGCAACGCGGCCGCGAAAGCGAGGCCGTGGACAAC
CCGAACGTCGCCATCGGCCTGGAAAGCGTCGAGCCGGGCGTGCTCAAGCTGCACTTCGAAGGCCAGCTGGAC
GCCCCGGAGAACGCCACCCATATCTGCTTCAGCCTGACCATCGGCCTCACCTACTACGGCCCGATCCTCGAC
GGCGCGGCCAGCGAGAACGGCGGCTGGATGACCTTCGAGAGCGACATGCTCGACCCGGCGCAACTGGCCTGA
Translation:
MRSWTAPPANDSQAPRGACRSQHWPAGASASSLSAALATPAPRQLEQDMYRDTVTLTVSAEQRGRESEAVDN
PNVAIGLESVEPGVLKLHFEGQLDAPENATHICFSLTIGLTYYGPILDGAASENGGWMTFESDMLDPAQLA*
AnnotationID:5823GeneID:5821
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 18:06:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11564




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28768




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5821
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197718
                           gb|AAN69693.1|AE016605_3
                           (AE016789) hypothetical protein [Pseudomonas putida KT2440]
                           145
                           35.17
                           45.51
                           47
                           256.0
     

     






      

          
GC ORFID: 48823How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1381637Stop: 1381206

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCGCAGTTGGACTGCGCCGCCGGCGAATGATTCCCAGGCCCCGCGCGGCGCCTGCCGCAGCCAGCACTGG 
CCAGCCGGCGCGTCTGCCAGTAGTCTGTCCGCCGCGCTGGCGACGCCGGCCCCACGCCAACTGGAGCAAGAC 
ATGTACCGAGACACCGTGACCCTCACCGTCAGCGCCGAGCAACGCGGCCGCGAAAGCGAGGCCGTGGACAAC 
CCGAACGTCGCCATCGGCCTGGAAAGCGTCGAGCCGGGCGTGCTCAAGCTGCACTTCGAAGGCCAGCTGGAC 
GCCCCGGAGAACGCCACCCATATCTGCTTCAGCCTGACCATCGGCCTCACCTACTACGGCCCGATCCTCGAC 
GGCGCGGCCAGCGAGAACGGCGGCTGGATGACCTTCGAGAGCGACATGCTCGACCCGGCGCAACTGGCCTGA