ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5808

TrivialName: PA14_40720

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_40720

PAO1 Ortholog Locus:

Sequence Length: 1479

Protein Length: 492

Start: 3637378

Stop: 3635900

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAN85486.1|AF484556_8 (AF484556) putative tetR-family transcriptional regulator [Streptomyces atroolivaceus] Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 21/109 (19%)

Sequence:

ATGATGAAGTGCACGGGCTTGCCGTGGCTGAAGTCGCGGGCGCGGTTTCGCCCGCTCTGTACGCCGAAGGCG
GCAGCCATCACGCTGTGCAGCATCTGCCAGAAGGTCGGCGGCTTCTGGTTCGGTTCTTCCGTCTCGATACCC
ATCGGTGGTCCTCCCTTTTCCATACCTGCCCTGAGAGTCTACACCCTTGGCGGGAGGAGGGTGGCTTCAGGC
CTGGCGGGCGGGGATGCGCCGTTCCGCCGTGCCCTGCGTGGCCCTGGCGCGCAGTTGCCCGCAGCCGCCGTC
GATGTCCTGGCCGGCCGAGTTGCGCACCTTGGTCAGCACGCCGCGGCTGTGCAGGTAGCGCACCAGCTCGAC
GATCCGCTCCCCGCTCGGGCGCCGGTAGGCGTCGCCGTCCATGCTGTTGTAGGGGATCAGGTTCATCACCGC
GAAGCGGCCCTTGAGCAGGCGCAGGATGCCGTCCATTTCCTCCAGGCTGTCGTTGATCCCTTCGAGCAGGGT
CCATTGGTACTGGATCGGATAGTCGACCCGGCGGGCGTAGGCCTCGCCGGCTTCCACCAGTTCTTCCGGGCT
CAGCGGCGGCGCCTTGGGCAACAGTTGCCGGCGCAGTTCGGCGCGGGTGCTGTGCAGGGACAGGGCGAGGGC
GGGCTTCACCCGTTGCAGGGGCAGGCGCTCGAACACGCGGGGATCGCCGACGGTGGAGAACACCAGGTTCTT
GTGGCCGATGCCGCCATCGGTGCCGAGCAGGTCGATGGCTTCGAGGACGTTGTCGAGGTTGTGCGCCGGCTC
GCCCATGCCCATGAACACCACTTTCTTCACCGCTCGCCGACGCCGCGCCAGGACCACCTGGGCGACCATCTC
CAGGCTGCCGACCTGGCGCAGCAGGCCGCTGCGGCCGGTCATGCAGAACACGCAGCCGACCGCGCAGCCGAC
CTGGGTCGAGACGCACAGCCCACCGCGCGGCAGCAGCACGCTTTCCACCATCTGCCGGTCGGCCAGTTCCAC
CAGCAGGCGCGACGAGCCGTCGCTCGCCGGATGCTCGCTGTGCAGGCGGGCGATGCCTTCCAGTTCCGCGGC
TACCTGGGGCAGACCGTGGCGTACGCCCAGCGGCAGGAAGTCCTCGGCCGGCTGGCGGGCGGTGCAGGCATC
GAGGGCGCGGCCCTGCAGCCAGGCGCGGACGATCCTCCCGCAATGCAGGGGCTTGGCGCCGAGATCGGCGAG
GCGCTGGTGGAGGTCTTGGCTACGCATGGGGCGCGCATCCTACCATTGCCCGTCATGAGGCGGTATGGCCGG
CGCCGACGTGCTATCGTTGCGCTCCGCTCCACCGCAGCAACGGAACCGTTCCATGAAATTCGTCCACCAGCG
CGAACACCTCAACGAAGACGACATCGTGGTCATCGAGTGTTCGCAGCAATGCAATATCCGCCTGATGAACGA
CGCCAATTTCCGCAGTTTCAAGAATGGCGGGCGGCATAG

Translation:

MMKCTGLPWLKSRARFRPLCTPKAAAITLCSICQKVGGFWFGSSVSIPIGGPPFSIPALRVYTLGGRRVASG
LAGGDAPFRRALRGPGAQLPAAAVDVLAGRVAHLGQHAAAVQVAHQLDDPLPARAPVGVAVHAVVGDQVHHR
EAALEQAQDAVHFLQAVVDPFEQGPLVLDRIVDPAGVGLAGFHQFFRAQRRRLGQQLPAQFGAGAVQGQGEG
GLHPLQGQALEHAGIADGGEHQVLVADAAIGAEQVDGFEDVVEVVRRLAHAHEHHFLHRSPTPRQDHLGDHL
QAADLAQQAAAAGHAEHAADRAADLGRDAQPTARQQHAFHHLPVGQFHQQARRAVARRMLAVQAGDAFQFRG
YLGQTVAYAQRQEVLGRLAGGAGIEGAALQPGADDPPAMQGLGAEIGEALVEVLATHGARILPLPVMRRYGR
RRRAIVALRSTAATEPFHEIRPPARTPQRRRHRGHRVFAAMQYPPDERRQFPQFQEWRAA*

AnnotationID:5810 GeneID:5808

AnnotatorUID: diggins

Modification Date/Time: 2005-03-01 21:09:38

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:11540

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28745