ViewGene
Locus Name:
GeneID:
Location:

GeneID:5799
TrivialName: PA14_41040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41040
PAO1 Ortholog Locus:
Sequence Length:756
Protein Length:251
Start: 3660459
Stop: 3661214
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGGCAGGCTATTCGCCGACCGGCGCTTCCAGTTGCGCCCAGAGCGACGGACCACCTGCCGACTTCTCGAT
CACCGCCAGCCGCGCCGCATGCGCAGCCAGCTCTTCGGCGTTGGCGCGCAGCACCGGGGTGGCGACCCGCGC
CGGATCGAGCCGACGGATCGGGCTGACCATCGGCCGGCCGCTGCCGTCGCCTTCCGCGCCGCTGCCGGCCAG
CGACAGGCTGGTCTGGCCACCGGTCATCGCCAGGTAGACGTCGGCGAGGATCTCGGCGTCGAGCAACGCGCC
GTGCAGGTCGCGGCCGGAGTTGTCCACGCCGTAGCGCTTGCACAACGCATCGAGGTTGTTGCGCTGACCCGG
ATGGCGCTCGCGGGCCATCAGCAGGGTATCCAGCACCGAGCAGTACTCGCTCACGTCCGAGCGGTCCTGCTG
GCCCAGCAGGGCGAACTCGTTGTTGATGAAGCCGATATCGAACGCCGCGTTATGGATGATCAGTTGGGCGCC
GCGGATGAACTCGAAGAAATCGTTGGCGACCTCGCGGAAGCGCGGCTTGTCCTTCAGGTATTCGTTGGTGAT
GCCGTGGACGGCGATCGCCCCTTCGTCGACCTCGCGATCGGGTTGCAGGTAGACGTGGAAGTGGCGACCGGT
CAGGCGGCGCCCCTCCAGCTCGACACAGCCGATCTCGATGATCCGGTGACCATCGGTCACCGGCATGCCGGT
GGTTTCGGTATCCAGTACGACGCTACGCATCTATAG
Translation:
MGRLFADRRFQLRPERRTTCRLLDHRQPRRMRSQLFGVGAQHRGGDPRRIEPTDRADHRPAAAVAFRAAAGQ
RQAGLATGHRQVDVGEDLGVEQRAVQVAAGVVHAVALAQRIEVVALTRMALAGHQQGIQHRAVLAHVRAVLL
AQQGELVVDEADIERRVMDDQLGAADELEEIVGDLAEARLVLQVFVGDAVDGDRPFVDLAIGLQVDVEVATG
QAAPLQLDTADLDDPVTIGHRHAGGFGIQYDATHL*
AnnotationID:5801GeneID:5799
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 19:07:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11523




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28728




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48801How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1293451Stop: 1292696

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene630Homolog Bit Score 209.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene630 (BLASTP 209)

          
GC ORF Sequence

           
ATGGGCAGGCTATTCGCCGACCGGCGCTTCCAGTTGCGCCCAGAGCGACGGACCACCTGCCGACTTCTCGAT 
CACCGCCAGCCGCGCCGCATGCGCAGCCAGCTCTTCGGCGTTGGCGCGCAGCACCGGGGTGGCGACCCGCGC 
CGGATCGAGCCGACGGATCGGGCTGACCATCGGCCGGCCGCTGCCGTCGCCTTCCGCGCCGCTGCCGGCCAG 
CGACAGGCTGGTCTGGCCACCGGTCATCGCCAGGTAGACGTCGGCGAGGATCTCGGCGTCGAGCAACGCGCC 
GTGCAGGTCGCGGCCGGAGTTGTCCACGCCGTAGCGCTTGCACAACGCATCGAGGTTGTTGCGCTGACCCGG 
ATGGCGCTCGCGGGCCATCAGCAGGGTATCCAGCACCGAGCAGTACTCGCTCACGTCCGAGCGGTCCTGCTG 
GCCCAGCAGGGCGAACTCGTTGTTGATGAAGCCGATATCGAACGCCGCGTTATGGATGATCAGTTGGGCGCC 
GCGGATGAACTCGAAGAAATCGTTGGCGACCTCGCGGAAGCGCGGCTTGTCCTTCAGGTATTCGTTGGTGAT 
GCCGTGGACGGCGATCGCCCCTTCGTCGACCTCGCGATCGGGTTGCAGGTAGACGTGGAAGTGGCGACCGGT 
CAGGCGGCGCCCCTCCAGCTCGACACAGCCGATCTCGATGATCCGGTGACCATCGGTCACCGGCATGCCGGT 
GGTTTCGGTATCCAGTACGACGCTACGCATCTATAG