ViewGene

Locus Name:
GeneID:
Location:

GeneID:5791
TrivialName: PA14_41370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41370
PAO1 Ortholog Locus:
Sequence Length:2607
Protein Length:868
Start: 3689039
Stop: 3691645
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAA80593.1| (AP000062) 198aa long hypothetical malonyl-CoA:acyl carrier protein acyltransferase [Aeropyrum pernix]
Identities = 44/104 (42%), Positives = 56/104 (53%)
Sequence:
ATGGCTGGCGATCAGCAGGTAACGCACCACTTCGGGGTGATATTTCTCCAGCACTTCGCGGATGGTGAAGAA
ATTGCCCAGCGACTTGGACATCTTCTCGCCGTTGATGGTAATCATCCCGCAGTGCAGCCAGGACTTGGCGTA
GGGCTTGCCAGTCGCGGCCTCGCTCTGGGCGATCTCGTTCTCGTGGTGAGGGAACTCCAGGTCGTTGCCACC
GCCATGGATGTCGAAGGAATCGCCCAGGCAGCAGGTGGACATCACCGAGCATTCGATGTGCCAGCCCGGGCG
CCCCTCGCCCCAGGGCGACGACCAGCTCGGCTCGCCCGGCTTGGCGCCCTTCCAGAGCACGAAATCGAGCGG
ATCCTCCTTCGCTTCGCCCGGTTCGATCCGCGCACCGATGCGCAGGTCCTCGACCCGCCGCCGCGACAACTT
GCCGTAGCCAGCGAACTTGCCGACCCGGTAGTACACGTCACCGTTGCCCGGCGCGTAGGCATAGCCCTTGTC
GATCAGGGTCTGGATCATCGCGTGCATGCCGGCGATGTGATCGGTGGCGCGCGGCTCCTGGTCCGGCTTGAG
GATGTTCAGCCGGGCCTCGTCCTCGTGCATCGCCGCGATCATGCGCTCGGTCAGCACATCGAACGGTTCGTC
GTTCTCGTTGGCGCGATTGATGATCTTGTCATCGATATCGGTGATGTTGCGCACGTACGTCAAGTCGTAGCC
ACGGTGGCGCAACCAGCGGGTGATCACGTCGAACGCCACCATGCTGCGGCCGTGGCCCAGATGGCAGTAGTC
GTACACGGTCATGCCGCACACGTACATGCGCACCTGGTTGCCGACCAGCGGCGTGAAGACTTCTTTGGTCTT
GCTCAGCGTGTTGTAGATCTGCAGCACGGTCTTTCCTCAGCCCTGTCCCCAGGAGTCACGCAGGGTGACGGT
ACGGTTGAACACCGGCTTGCCCGGCCTGGAGTCCTTCAGGTCGGCGACGAAATAGCCTTCGCGCTCGAACTG
GAAGCGATCCTCCGGGTTCGCCTGGCCCAGCGACGGCTCGGCGCGACAGCCGGTCAGTACCTGCAGGGAGTC
GGCGTTGATGTTGTCGAGGAAGCTGCCGCCCTCTTCCGCCTTCTCCGGATTGGCCGAGCGGAACAGCCGATC
GTACAGGCGCACTTCGCACTCGACGCTGCCCTCGGCCGGCACCCAGTGGATCACGCCCTTGACCTTGCGGCC
TTCCGGGTTCTTGCCCAGGGTGTCCGGATCGTAGCTGCAGCGCAGTTCGACGATATTGCCGTCGGCATCCTT
GATCGCTTCGTCGGCACGGATCACGTAGCTGCCACGCAGACGCACCTCGCCACCGGGGATCAGGCGCTTGTA
GCCGGCCGGCGGGACTTCCTCGAAGTCACCGGCATCGATGAACAGCTCGCGACCGAACGGCAGTACGCGCAC
CCCCATGTCTTCCTTCGGATGACGCGGCAACTCGAGGTTCTCCACCTGCCCTTCGGGGTAGTTGGTGATCAC
CACCTTGAGCGGTTTCAGCACGCACATGGCACGCGGCGCGGTGGCGTCCAGGTGGTCGCGGATGCTGAACTC
GAGCATGCCGATGTCGACCACGCCGCTGGCGCGGTTCACCCCGATCATCTCGCAGAAGTTGCGGATCGACTC
CGGGGTGTAGCCGCGGCGGCGATAGCCGGACAGGGTCGACATGCGCGGATCGTCCCAGCCGCTGACATGGCC
TTCGTCGACCAGTTGCTTGAGCTTGCGCTTGCTGGTCACGGTGTAGTTCAGGTTGAGCCGGGAGAATTCGTA
CTGGCGCGGTTGCGCAGGCACCGGCAGGTTGGCCAGGAACCACTCGTAGAGCGGACGATGGTCTTCGAATTC
CAGGGTGCAGATCGAATGGGTGATGCCCTCGATGGCGTCCGACTGACCGTGGGTGAAGTCGTAGCTCGGGTA
GATGCACCACTTGTCGCCGGTCTGGTGGTGATGCGCATGGCGGATGCGGTACAGGATCGGGTCGCGCAGGTT
CATGTTCGGCGAACCCATGTCGATCTTCGCCCGCAGCGAACGGGCGCCGTCGGGGAACTCACCGGCCTTCAT
GCGGGCGAACAGGTCGAGGTTCTCCTCCACCGAACGGTCACGGTAAGGGCTGTTGCGGCCCGGCTCGGTGAG
GGTGCCGCGGTATTCGCGCATTTCCTCGGGACCGAGGTCGCAGACGAACGCCTTGCCGGCCTTGATCAGCTC
GATGGCCCAGGCATGCAGCTGGTCGAAATAGTTGGAGGCATAGCAGACCTCGCCGGACCACTGGAAGCCCAG
CCACTTGATGTCGGCCTCGATGGCATCGATGTACTCCTGGTCTTCCTTGGCCGGGTTGGTGTCATCGAAGCG
CAGATGGCAATCGCCAGCGAATTCCTGGGCCAGGCCGAAGTTCAGGCAGATCGACTTGGCGTGGCCGATGTG
CAGGTAACCGTTGGGCTCCGGGGGGAAACGGGTGACGATCTTCGCGTGCTTGCCGGCATCCAGGTCGGCTTG
AACGATCTGGCGCAGGAAGTTCGGGGCGGCGGTGGTCTCTGGCTTGCTCATGGGATCCTTGGTCATGCTCTC
GCCCGACCAGGGTAG
Translation:
MAGDQQVTHHFGVIFLQHFADGEEIAQRLGHLLAVDGNHPAVQPGLGVGLASRGLALGDLVLVVRELQVVAT
AMDVEGIAQAAGGHHRAFDVPARAPLAPGRRPARLARLGALPEHEIERILLRFARFDPRTDAQVLDPPPRQL
AVASELADPVVHVTVARRVGIALVDQGLDHRVHAGDVIGGARLLVRLEDVQPGLVLVHRRDHALGQHIERFV
VLVGAIDDLVIDIGDVAHVRQVVATVAQPAGDHVERHHAAAVAQMAVVVHGHAAHVHAHLVADQRREDFFGL
AQRVVDLQHGLSSALSPGVTQGDGTVEHRLARPGVLQVGDEIAFALELEAILRVRLAQRRLGATAGQYLQGV
GVDVVEEAAALFRLLRIGRAEQPIVQAHFALDAALGRHPVDHALDLAAFRVLAQGVRIVAAAQFDDIAVGIL
DRFVGTDHVAATQTHLATGDQALVAGRRDFLEVTGIDEQLATERQYAHPHVFLRMTRQLEVLHLPFGVVGDH
HLERFQHAHGTRRGGVQVVADAELEHADVDHAAGAVHPDHLAEVADRLRGVAAAAIAGQGRHARIVPAADMA
FVDQLLELALAGHGVVQVEPGEFVLARLRRHRQVGQEPLVERTMVFEFQGADRMGDALDGVRLTVGEVVARV
DAPLVAGLVVMRMADAVQDRVAQVHVRRTHVDLRPQRTGAVGELTGLHAGEQVEVLLHRTVTVRAVAARLGE
GAAVFAHFLGTEVADERLAGLDQLDGPGMQLVEIVGGIADLAGPLEAQPLDVGLDGIDVLLVFLGRVGVIEA
QMAIASEFLGQAEVQADRLGVADVQVTVGLRGETGDDLRVLAGIQVGLNDLAQEVRGGGGLWLAHGILGHAL
ARPG*
AnnotationID:5793GeneID:5791
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 13:01:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:11511
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28713
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48793How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1264870Stop: 1262264
Length: 2607
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: psyr_15may02_Scaffold1_revised_gene652 related to: gi|7521183|pir||D72538 probable malonyl-CoA:acyl carrier protein acyltransferase APE1593 - Aeropyrum pernix (strain K1) dbj|BAA80593.1| (AP000062) 198aa long hypothetical malonyl-CoA:acyl carrier proteinHomolog Bit Score 397.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene652 related to: gi|7521183|pir||D72538 probable malonyl-CoA:acyl carrier protein acyltransferase APE1593 - Aeropyrum pernix (strain K1) dbj|BAA80593.1| (AP000062) 198aa long hypothetical malonyl-CoA:acyl carrier protein acyltransferase [Aeropyrum pernix] (BLASTP 397)
GC ORF Sequence
ATGGCTGGCGATCAGCAGGTAACGCACCACTTCGGGGTGATATTTCTCCAGCACTTCGCGGATGGTGAAGAA
ATTGCCCAGCGACTTGGACATCTTCTCGCCGTTGATGGTAATCATCCCGCAGTGCAGCCAGGACTTGGCGTA
GGGCTTGCCAGTCGCGGCCTCGCTCTGGGCGATCTCGTTCTCGTGGTGAGGGAACTCCAGGTCGTTGCCACC
GCCATGGATGTCGAAGGAATCGCCCAGGCAGCAGGTGGACATCACCGAGCATTCGATGTGCCAGCCCGGGCG
CCCCTCGCCCCAGGGCGACGACCAGCTCGGCTCGCCCGGCTTGGCGCCCTTCCAGAGCACGAAATCGAGCGG
ATCCTCCTTCGCTTCGCCCGGTTCGATCCGCGCACCGATGCGCAGGTCCTCGACCCGCCGCCGCGACAACTT
GCCGTAGCCAGCGAACTTGCCGACCCGGTAGTACACGTCACCGTTGCCCGGCGCGTAGGCATAGCCCTTGTC
GATCAGGGTCTGGATCATCGCGTGCATGCCGGCGATGTGATCGGTGGCGCGCGGCTCCTGGTCCGGCTTGAG
GATGTTCAGCCGGGCCTCGTCCTCGTGCATCGCCGCGATCATGCGCTCGGTCAGCACATCGAACGGTTCGTC
GTTCTCGTTGGCGCGATTGATGATCTTGTCATCGATATCGGTGATGTTGCGCACGTACGTCAAGTCGTAGCC
ACGGTGGCGCAACCAGCGGGTGATCACGTCGAACGCCACCATGCTGCGGCCGTGGCCCAGATGGCAGTAGTC
GTACACGGTCATGCCGCACACGTACATGCGCACCTGGTTGCCGACCAGCGGCGTGAAGACTTCTTTGGTCTT
GCTCAGCGTGTTGTAGATCTGCAGCACGGTCTTTCCTCAGCCCTGTCCCCAGGAGTCACGCAGGGTGACGGT
ACGGTTGAACACCGGCTTGCCCGGCCTGGAGTCCTTCAGGTCGGCGACGAAATAGCCTTCGCGCTCGAACTG
GAAGCGATCCTCCGGGTTCGCCTGGCCCAGCGACGGCTCGGCGCGACAGCCGGTCAGTACCTGCAGGGAGTC
GGCGTTGATGTTGTCGAGGAAGCTGCCGCCCTCTTCCGCCTTCTCCGGATTGGCCGAGCGGAACAGCCGATC
GTACAGGCGCACTTCGCACTCGACGCTGCCCTCGGCCGGCACCCAGTGGATCACGCCCTTGACCTTGCGGCC
TTCCGGGTTCTTGCCCAGGGTGTCCGGATCGTAGCTGCAGCGCAGTTCGACGATATTGCCGTCGGCATCCTT
GATCGCTTCGTCGGCACGGATCACGTAGCTGCCACGCAGACGCACCTCGCCACCGGGGATCAGGCGCTTGTA
GCCGGCCGGCGGGACTTCCTCGAAGTCACCGGCATCGATGAACAGCTCGCGACCGAACGGCAGTACGCGCAC
CCCCATGTCTTCCTTCGGATGACGCGGCAACTCGAGGTTCTCCACCTGCCCTTCGGGGTAGTTGGTGATCAC
CACCTTGAGCGGTTTCAGCACGCACATGGCACGCGGCGCGGTGGCGTCCAGGTGGTCGCGGATGCTGAACTC
GAGCATGCCGATGTCGACCACGCCGCTGGCGCGGTTCACCCCGATCATCTCGCAGAAGTTGCGGATCGACTC
CGGGGTGTAGCCGCGGCGGCGATAGCCGGACAGGGTCGACATGCGCGGATCGTCCCAGCCGCTGACATGGCC
TTCGTCGACCAGTTGCTTGAGCTTGCGCTTGCTGGTCACGGTGTAGTTCAGGTTGAGCCGGGAGAATTCGTA
CTGGCGCGGTTGCGCAGGCACCGGCAGGTTGGCCAGGAACCACTCGTAGAGCGGACGATGGTCTTCGAATTC
CAGGGTGCAGATCGAATGGGTGATGCCCTCGATGGCGTCCGACTGACCGTGGGTGAAGTCGTAGCTCGGGTA
GATGCACCACTTGTCGCCGGTCTGGTGGTGATGCGCATGGCGGATGCGGTACAGGATCGGGTCGCGCAGGTT
CATGTTCGGCGAACCCATGTCGATCTTCGCCCGCAGCGAACGGGCGCCGTCGGGGAACTCACCGGCCTTCAT
GCGGGCGAACAGGTCGAGGTTCTCCTCCACCGAACGGTCACGGTAAGGGCTGTTGCGGCCCGGCTCGGTGAG
GGTGCCGCGGTATTCGCGCATTTCCTCGGGACCGAGGTCGCAGACGAACGCCTTGCCGGCCTTGATCAGCTC
GATGGCCCAGGCATGCAGCTGGTCGAAATAGTTGGAGGCATAGCAGACCTCGCCGGACCACTGGAAGCCCAG
CCACTTGATGTCGGCCTCGATGGCATCGATGTACTCCTGGTCTTCCTTGGCCGGGTTGGTGTCATCGAAGCG
CAGATGGCAATCGCCAGCGAATTCCTGGGCCAGGCCGAAGTTCAGGCAGATCGACTTGGCGTGGCCGATGTG
CAGGTAACCGTTGGGCTCCGGGGGGAAACGGGTGACGATCTTCGCGTGCTTGCCGGCATCCAGGTCGGCTTG
AACGATCTGGCGCAGGAAGTTCGGGGCGGCGGTGGTCTCTGGCTTGCTCATGGGATCCTTGGTCATGCTCTC
GCCCGACCAGGGTAG