ViewGene

Locus Name:
GeneID:
Location:

GeneID:5790
TrivialName: PA14_41410
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 15:03:12
LocusName:PA14_41410
PAO1 Ortholog Locus:
Sequence Length:1437
Protein Length:478
Start: 3694431
Stop: 3692995
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
TTGCTGCCTGAATCAGTCCTTGACCTTGAGGTCGAGGGCCAGGTCGCGGGCGGCCTTGGTCGCCAGAACGCC
CATCAGCTGGCCGATCTCGTCCTGGCGGCTCGCCGCGCCGTTGGCGCCGGCGCCCATCATTACGCTGGGGAC
GGGGGCCTGGGCGGCGGCTTCGGCCCAGACCTTGTTGATCGCGATCAGCGCGTCGAGCTTCGGCTGCAACGC
GCCGTCCGCCTTGATCACCGCTTCGCGGGCGTAGGCCTCGGCGTCGGCGGTGATCTTGGTGGCCTGGGCGGT
CACCGTGGCCTTGTCGCGCAGCAGTTCGGCGGTCTGCTTCTCGATCTCGGCGCGCTGCTTCTCGCGCTCGGC
GTTGATCACCGCCAATTGCTTGTCGGTTTCCGCCTGGGTGGTGCGTTCGATCTGGTCGCGCAGGGTTTCCTG
GCGCTTGGCCTCGACTTCCTTCTCGCCGCGGGCGGTGACCAGCAGCTTTTCCTCTTCTTCCTTCAGGCGGTT
CTGCCGCGCCACCGCCAGCTCGGCGAGCGCCTGCTGGACCTTGACCATGCGCTGCTTGTACTGCGGGTTGGG
ATCGACGTTGGTGATCCGCGCTTCCACCACCTCGACGCCGAACTTGCGGAACTGCTGTTGCTTGCGTACCGG
GATGCCCTTGGCATCAGTGACCTTCTCGGTGACGAACTGGCTGGCGTTGTTGTCGCCGAACGCTCCCTGCTC
AGTGCCGGCCTGGAGGATCGCGGTCTGGTGCGGAATGGCGCCGCGCGGCCCGCGGACTTCCTTGCGCTTGAT
CAGGTACAGGCCGTCGTTGAGCTGGTTCTCGAACTCGGCGGCGAATTCGCTGCGGGCTCCGGCGTAGTAGTC
GTCGGCGCTCATCAGCGAAGCGGTGGCCTGGAGGGTTTCCTTGATCGCCGGCACCAGTGCGGTGCGGATGAA
ATTGTCCGGGTTGCGGTATTCCTGGGCCATCTTCAGGAACGGCTCGCCGCCGGGCAGGCGAAAGCGCGCGGA
AGATTCGACCTTGGCGTCGACGTTGCCGAGGAACACGATCGGGAAAGCCTCGATGGTGGCGCCGAGGCCGTC
GTTGTCCGGATTGGTGTCGTTATCGTCCATGACCAGCACGGACTGCACGCTGATGGCCTTCTTCCAGGTGGT
GGCGCGACCGAACCACTTGGTCGCGTAGCCGACGTCATCGACGATCTTCTCGTCGCCGAAGATGGTCCTTAC
GTGGGTCATGAAGCCGGCTTCGTTATAGAAGAACACGCCGTTGAACAGGCCGAAGCCGAGGGCGAGCACGCC
GAGGGGGGCGGCGACGAACTTGATCAGGTTTCCCTTCGAGATGATCACGATCATTCCTTGATGCGGGGTGGG
GAGCGCGATCCTGCTGAAAGGTGGCCCGCGACGTCAAGATGGACGGCGGGAAAAATGCGAATCGCATAA
Translation:
MLPESVLDLEVEGQVAGGLGRQNAHQLADLVLAARRAVGAGAHHYAGDGGLGGGFGPDLVDRDQRVELRLQR
AVRLDHRFAGVGLGVGGDLGGLGGHRGLVAQQFGGLLLDLGALLLALGVDHRQLLVGFRLGGAFDLVAQGFL
ALGLDFLLAAGGDQQLFLFFLQAVLPRHRQLGERLLDLDHALLVLRVGIDVGDPRFHHLDAELAELLLLAYR
DALGISDLLGDELAGVVVAERSLLSAGLEDRGLVRNGAARPADFLALDQVQAVVELVLELGGEFAAGSGVVV
VGAHQRSGGLEGFLDRRHQCGADEIVRVAVFLGHLQERLAAGQAKARGRFDLGVDVAEEHDRESLDGGAEAV
VVRIGVVIVHDQHGLHADGLLPGGGATEPLGRVADVIDDLLVAEDGPYVGHEAGFVIEEHAVEQAEAEGEHA
EGGGDELDQVSLRDDHDHSLMRGGERDPAERWPATSRWTAGKMRIA*
AnnotationID:5792GeneID:5790
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 15:03:32
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15673
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28711
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48792How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1259478Stop: 1260914
Length: 1437
Start Codon: TTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCTGCCTGAATCAGTCCTTGACCTTGAGGTCGAGGGCCAGGTCGCGGGCGGCCTTGGTCGCCAGAACGCC
CATCAGCTGGCCGATCTCGTCCTGGCGGCTCGCCGCGCCGTTGGCGCCGGCGCCCATCATTACGCTGGGGAC
GGGGGCCTGGGCGGCGGCTTCGGCCCAGACCTTGTTGATCGCGATCAGCGCGTCGAGCTTCGGCTGCAACGC
GCCGTCCGCCTTGATCACCGCTTCGCGGGCGTAGGCCTCGGCGTCGGCGGTGATCTTGGTGGCCTGGGCGGT
CACCGTGGCCTTGTCGCGCAGCAGTTCGGCGGTCTGCTTCTCGATCTCGGCGCGCTGCTTCTCGCGCTCGGC
GTTGATCACCGCCAATTGCTTGTCGGTTTCCGCCTGGGTGGTGCGTTCGATCTGGTCGCGCAGGGTTTCCTG
GCGCTTGGCCTCGACTTCCTTCTCGCCGCGGGCGGTGACCAGCAGCTTTTCCTCTTCTTCCTTCAGGCGGTT
CTGCCGCGCCACCGCCAGCTCGGCGAGCGCCTGCTGGACCTTGACCATGCGCTGCTTGTACTGCGGGTTGGG
ATCGACGTTGGTGATCCGCGCTTCCACCACCTCGACGCCGAACTTGCGGAACTGCTGTTGCTTGCGTACCGG
GATGCCCTTGGCATCAGTGACCTTCTCGGTGACGAACTGGCTGGCGTTGTTGTCGCCGAACGCTCCCTGCTC
AGTGCCGGCCTGGAGGATCGCGGTCTGGTGCGGAATGGCGCCGCGCGGCCCGCGGACTTCCTTGCGCTTGAT
CAGGTACAGGCCGTCGTTGAGCTGGTTCTCGAACTCGGCGGCGAATTCGCTGCGGGCTCCGGCGTAGTAGTC
GTCGGCGCTCATCAGCGAAGCGGTGGCCTGGAGGGTTTCCTTGATCGCCGGCACCAGTGCGGTGCGGATGAA
ATTGTCCGGGTTGCGGTATTCCTGGGCCATCTTCAGGAACGGCTCGCCGCCGGGCAGGCGAAAGCGCGCGGA
AGATTCGACCTTGGCGTCGACGTTGCCGAGGAACACGATCGGGAAAGCCTCGATGGTGGCGCCGAGGCCGTC
GTTGTCCGGATTGGTGTCGTTATCGTCCATGACCAGCACGGACTGCACGCTGATGGCCTTCTTCCAGGTGGT
GGCGCGACCGAACCACTTGGTCGCGTAGCCGACGTCATCGACGATCTTCTCGTCGCCGAAGATGGTCCTTAC
GTGGGTCATGAAGCCGGCTTCGTTATAGAAGAACACGCCGTTGAACAGGCCGAAGCCGAGGGCGAGCACGCC
GAGGGGGGCGGCGACGAACTTGATCAGGTTTCCCTTCGAGATGATCACGATCATTCCTTGATGCGGGGTGGG
GAGCGCGATCCTGCTGAAAGGTGGCCCGCGACGTCAAGATGGACGGCGGGAAAAATGCGAATCGCATAA