ViewGene
Locus Name:
GeneID:
Location:

GeneID:5787
TrivialName: PA14_41565
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41565
PAO1 Ortholog Locus:
Sequence Length:588
Protein Length:195
Start: 3711791
Stop: 3712378
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by GeneID7371 (PA14_41563). Homology: gb|AAG05167.1|AE004603_7 (AE004603) uroporphyrin-III C-methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 194/195 (99%), Positives = 195/195 (100%)
Sequence:
gtggtcCGGGTCGGCAAACGCGGCGGCTGCCGCtCCACACCGCAGGACTTCATCCAGCGCCTGATGCTGCGG
CATGCCCGCCAGGGACGCAGCGTGGTGCGCCTGAAAGGCGGCGATCCATGCATCTTCGGCCGCGCCGGCGAA
GAAGCCGAATGGCTGGCCCGGCACGGGATAGACAGCGAGATAGTGAACGGCATCACCGCCGGGCTGGCTGGC
GCCACTGCCTGCGGCATACCGCTGACCTACCGCGGCATCAGCCGCGGCGTGACCCTGGTGACCGCGCATACC
CAGGACGACAGCCCGCTGGCCTGGGAAGCCCTGGCACGCAGCGGTACCACGCTGGTGGTCTACATGGGCGTC
GCCCGACTCGCGGAGATCCAGGCCGGGCTGCTGGCTGGAGGCATGGCCGAGGATACGCCGCTGGCGATGATC
GAGAACGCCACCTTGGGCAACCAGCGCGAATGCCGCAGCAACCTCGGCGAGCTACTGCGGGACGCCGGACGT
TTCGCCTTGAAAAGCCCGGCGATCCTGGTGATCGGCGAAGTAACCCGCGACATCGTGTCGCAACCGATTTCC
CTGAGCGCCTGA
Translation:
MVRVGKRGGCRSTPQDFIQRLMLRHARQGRSVVRLKGGDPCIFGRAGEEAEWLARHGIDSEIVNGITAGLAG
ATACGIPLTYRGISRGVTLVTAHTQDDSPLAWEALARSGTTLVVYMGVARLAEIQAGLLAGGMAEDTPLAMI
ENATLGNQRECRSNLGELLRDAGRFALKSPAILVIGEVTRDIVSQPISLSA*
AnnotationID:5789GeneID:5787
AnnotatorUID: danlee
Modification Date/Time: 2005-12-02 15:03:39
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:2.1.1.107
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN67704.1|AE016401_7 (AE016781) uroporphyrin-III C-methyltransferase [Pseudomonas putida
           KT2440]
          Length = 246

 Score =  275 bits (703), Expect = 1e-73
 Identities = 137/182 (75%), Positives = 154/182 (84%)

>gb|AAO55814.1| (AE016864) uroporphyrin-III C-methyltransferase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 253

 Score =  271 bits (692), Expect = 2e-72
 Identities = 136/182 (74%), Positives = 151/182 (82%)

>gb|AAM41299.1| (AE012305) uroporphyrin-III C-methyltransferase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 258

 Score =  164 bits (415), Expect = 3e-40
 Identities = 87/180 (48%), Positives = 115/180 (63%), Gaps = 1/180 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15672




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28705




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37145




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5787_cdd.html


    		




 
URL:

















    ReferenceID:37821




  
Author/Investigator(s):
        De Mot R, Schoofs G, Nagy I, Vanderleyden J.





  
Title:
        Sequence of the cobA gene encoding S-adenosyl-L-methionine: uroporhyrinogen III methyltransferase of Pseudomonas fluorescens.




  
PubMed:
        7959054


MedLine:
        




    
Source:
Gene. 1994 Dec 2;150(1):199-200.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7959054

















    ReferenceID:37822




  
Author/Investigator(s):
        Suh SJ, Escalante-Semerena JC.





  
Title:
        Cloning, sequencing and overexpression of cobA which encodes ATP:corrinoid adenosyltransferase in Salmonella typhimurium.




  
PubMed:
        7916712


MedLine:
        




    
Source:
Gene. 1993 Jul 15;129(1):93-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7916712

















    ReferenceID:37823




  
Author/Investigator(s):
        Sattler I, Roessner CA, Stolowich NJ, Hardin SH, Harris-Haller LW, Yokubaitis NT, Murooka Y, Hashimoto Y, Scott AI.





  
Title:
        Cloning, sequencing, and expression of the uroporphyrinogen III methyltransferase cobA gene of Propionibacterium freudenreichii (shermanii).




  
PubMed:
        7883713


MedLine:
        




    
Source:
J Bacteriol. 1995 Mar;177(6):1564-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7883713









           
Homologs By Global Alignment 

           

       



     
Gene ID:5787
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7910
                           PA1778_tr
                           translation of PA1778
                           245
                           79.59
                           79.59
                           50
                           987.0
     

     
     
197548
                           gb|AAG05167.1|AE004603_7
                           (AE004603) uroporphyrin-III C-methyltransferase [Pseudomonas aeruginosa PAO1]
                           245
                           79.59
                           79.59
                           50
                           987.0
     

     
     
197549
                           gb|AAN67704.1|AE016401_7
                           (AE016781) uroporphyrin-III C-methyltransferase [Pseudomonas putida KT2440]
                           248
                           56.04
                           63.70
                           55
                           698.0
     

     
     
197550
                           gb|AAO55814.1|
                           (AE016864) uroporphyrin-III C-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           253
                           54.54
                           62.84
                           58
                           693.0
     

     
     
197551
                           gb|AAD45977.1|AF115334_4
                           (AF115334) CobA [Pseudomonas fluorescens]
                           247
                           51.41
                           58.29
                           52
                           620.0
     

     






      

          
GC ORFID: 48789How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1242117Stop: 1241530

          
Length: 588


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1778 translation of PA1778Homolog Bit Score 384.0

          
Other Homologs:  t_PA1778 translation of PA1778 (BLASTP 384), psyr_15may02_Scaffold1_revised_gene369 related to: gi|586052|sp|P37725|SUMT_PSEFL Uroporphyrin-III C-methyltransferase (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM) gb|AAD45977.1|AF115334_4 (AF115334) CobA [Pseudomonas fluorescens] (BLASTP 270), t_PA0510 translation of PA0510 (BLASTP 160), t_PA2611 translation of PA2611 (BLASTP 138), psyr_15may02_Scaffold17_revised_gene2817 related to: gi|15597807|ref|NP_251301.1| (NC_002516) siroheme synthase [Pseudomonas aeruginosa] pir||F83320 siroheme synthase PA2611 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05999.1|AE004689_11 (AE004689) siroheme synthase [Pseudomonas aerugin-TRUNCATED- (BLASTP 135)

          
GC ORF Sequence

           
ttggtcCGGGTCGGCAAACGCGGCGGCTGCCGCtCCACACCGCAGGACTTCATCCAGCGCCTGATGCTGCGG 
CATGCCCGCCAGGGACGCAGCGTGGTGCGCCTGAAAGGCGGCGATCCATGCATCTTCGGCCGCGCCGGCGAA 
GAAGCCGAATGGCTGGCCCGGCACGGGATAGACAGCGAGATAGTGAACGGCATCACCGCCGGGCTGGCTGGC 
GCCACTGCCTGCGGCATACCGCTGACCTACCGCGGCATCAGCCGCGGCGTGACCCTGGTGACCGCGCATACC 
CAGGACGACAGCCCGCTGGCCTGGGAAGCCCTGGCACGCAGCGGTACCACGCTGGTGGTCTACATGGGCGTC 
GCCCGACTCGCGGAGATCCAGGCCGGGCTGCTGGCTGGAGGCATGGCCGAGGATACGCCGCTGGCGATGATC 
GAGAACGCCACCTTGGGCAACCAGCGCGAATGCCGCAGCAACCTCGGCGAGCTACTGCGGGACGCCGGACGT 
TTCGCCTTGAAAAGCCCGGCGATCCTGGTGATCGGCGAAGTAACCCGCGACATCGTGTCGCAACCGATTTCC 
CTGAGCGCCTGA