ViewGene

Locus Name:
GeneID:
Location:

GeneID:5784
TrivialName: PA14_41620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41620
PAO1 Ortholog Locus:
Sequence Length:1323
Protein Length:440
Start: 3715157
Stop: 3716479
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGCGGCGAACCGTTGTTGATGCCGATCATCAGCGCCTGCAGCCAGTGCCCCATGAGGCTGAACAGGTCACC
GGCGCCAACCTGGCGATTGGCGGTCTTCAGCACCCGTCCCAGACGCGCGTCGTCGTCCGGCTGGGGAGCCGA
AGCCTTGAGCAGGTCCCGCAGGGACTCTTCGAACGGATCGTGCATGCACACCTCATGTCTGTACGAGGGAGT
GACGCCCTCTCCTCACCCCAGGTCACGTCAGAGCCAGCGCAGCCGACGAAATACCCACCACTGGAAGGTGGC
GACCCCGCCGATCAGCAGGCAGGCCAGCCAGAACCCATGCGGTGCATCCGCCCCCGGAATGCCGCCGACATT
GATTCCCAGCAGGCCGGTGACGAAGCTCATCGGCAGGAAAAAGCCGGTGATTATACCAAGGAGATACATGGT
GCGGTTCATCCGTTCGGTGATTCGCCGCGACTCGGCTTCCTGCAGGACGCTGATGCGCTCCCGTATCAACTC
GAGCTCTTCGAGATTCCGCGTCAGCCGGTTGTTCAGCTCGTTCCAGTAATCGGCGTCGTCCTCGACGAACCA
GGACAGCTTGTAGCGCGCCAGTTGCGAGTAGATATCCCGCTGCGGCGCCAGGTAGCGCCGCAACCCCGCCGA
CCGGCGGCGCAGGGTACGCAACTGGTGCTGGTCGGGACTGGCGCGCTCGTCCGCCTCGACCAGTTCCTCGAC
AGCATCGAGCTGGTCGGCTATCCCGCTGATCAGCGTGTCGACGCGATCGGTCAGGTAGTGCGCGAGGTAGTA
CACGACCTCGGATGCCGTCTTCGGCCCTTTCCCCGCCTCCAGGTCCTCGAGCAGATCGGCCACCGCCTTCAG
CGGCCGCAGGCGCAGCGAGATCACCCGGCGCGCGTCGGCGAATACCCGCAGCGAAACCATGTCTTCCGGCTC
CGCGCCCGGATTCAGGTTCACTCCACGGAGGAACACCAGCAGGCTTTCGGCCCCGAGATCGAGCAAACGGGG
GCGAGTCGCCTCCTCCAGCAGCAGATCGCAGGCGAACTCGCTGAGCCCCGCGGAATCCCGCAGCCAGGCCTG
CGCTTCCGGTACGCCGCGGTCCCAGTGCAGCCAAAGGCTCTCCTCCGGCAGCAGGTCGAGCACCGCTATCTG
GTTGCGTCCGACACGGCGTCCGCCGCCGCGCCCGTTGAGGACGTAGCCATAGATCAAGCCGCGCTCGTCACC
CGACTCGTACGCTTGCATTGCGCTTCCCTTGGTAAAACGACCATTTCGACAGTAAAAACACAAGTCCGGTAC
CAGTCAATTCATGGACTTGCGGCATAA
Translation:
MRRTVVDADHQRLQPVPHEAEQVTGANLAIGGLQHPSQTRVVVRLGSRSLEQVPQGLFERIVHAHLMSVRGS
DALSSPQVTSEPAQPTKYPPLEGGDPADQQAGQPEPMRCIRPRNAADIDSQQAGDEAHRQEKAGDYTKEIHG
AVHPFGDSPRLGFLQDADALPYQLELFEIPRQPVVQLVPVIGVVLDEPGQLVARQLRVDIPLRRQVAPQPRR
PAAQGTQLVLVGTGALVRLDQFLDSIELVGYPADQRVDAIGQVVREVVHDLGCRLRPFPRLQVLEQIGHRLQ
RPQAQRDHPARVGEYPQRNHVFRLRARIQVHSTEEHQQAFGPEIEQTGASRLLQQQIAGELAEPRGIPQPGL
RFRYAAVPVQPKALLRQQVEHRYLVASDTASAAAPVEDVAIDQAALVTRLVRLHCASLGKTTISTVKTQVRY
QSIHGLAA*
AnnotationID:5786GeneID:5784
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 09:09:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:11498
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28699
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48786How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1238752Stop: 1237430
Length: 1323
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGGCGAACCGTTGTTGATGCCGATCATCAGCGCCTGCAGCCAGTGCCCCATGAGGCTGAACAGGTCACC
GGCGCCAACCTGGCGATTGGCGGTCTTCAGCACCCGTCCCAGACGCGCGTCGTCGTCCGGCTGGGGAGCCGA
AGCCTTGAGCAGGTCCCGCAGGGACTCTTCGAACGGATCGTGCATGCACACCTCATGTCTGTACGAGGGAGT
GACGCCCTCTCCTCACCCCAGGTCACGTCAGAGCCAGCGCAGCCGACGAAATACCCACCACTGGAAGGTGGC
GACCCCGCCGATCAGCAGGCAGGCCAGCCAGAACCCATGCGGTGCATCCGCCCCCGGAATGCCGCCGACATT
GATTCCCAGCAGGCCGGTGACGAAGCTCATCGGCAGGAAAAAGCCGGTGATTATACCAAGGAGATACATGGT
GCGGTTCATCCGTTCGGTGATTCGCCGCGACTCGGCTTCCTGCAGGACGCTGATGCGCTCCCGTATCAACTC
GAGCTCTTCGAGATTCCGCGTCAGCCGGTTGTTCAGCTCGTTCCAGTAATCGGCGTCGTCCTCGACGAACCA
GGACAGCTTGTAGCGCGCCAGTTGCGAGTAGATATCCCGCTGCGGCGCCAGGTAGCGCCGCAACCCCGCCGA
CCGGCGGCGCAGGGTACGCAACTGGTGCTGGTCGGGACTGGCGCGCTCGTCCGCCTCGACCAGTTCCTCGAC
AGCATCGAGCTGGTCGGCTATCCCGCTGATCAGCGTGTCGACGCGATCGGTCAGGTAGTGCGCGAGGTAGTA
CACGACCTCGGATGCCGTCTTCGGCCCTTTCCCCGCCTCCAGGTCCTCGAGCAGATCGGCCACCGCCTTCAG
CGGCCGCAGGCGCAGCGAGATCACCCGGCGCGCGTCGGCGAATACCCGCAGCGAAACCATGTCTTCCGGCTC
CGCGCCCGGATTCAGGTTCACTCCACGGAGGAACACCAGCAGGCTTTCGGCCCCGAGATCGAGCAAACGGGG
GCGAGTCGCCTCCTCCAGCAGCAGATCGCAGGCGAACTCGCTGAGCCCCGCGGAATCCCGCAGCCAGGCCTG
CGCTTCCGGTACGCCGCGGTCCCAGTGCAGCCAAAGGCTCTCCTCCGGCAGCAGGTCGAGCACCGCTATCTG
GTTGCGTCCGACACGGCGTCCGCCGCCGCGCCCGTTGAGGACGTAGCCATAGATCAAGCCGCGCTCGTCACC
CGACTCGTACGCTTGCATTGCGCTTCCCTTGGTAAAACGACCATTTCGACAGTAAAAACACAAGTCCGGTAC
CAGTCAATTCATGGACTTGCGGCATAA