ViewGene

Locus Name:
GeneID:
Location:

GeneID:5783
TrivialName: PA14_41660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41660
PAO1 Ortholog Locus:
Sequence Length:2547
Protein Length:848
Start: 3718225
Stop: 3720771
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA17744.1| (AL022022) PE_PGRS [Mycobacterium tuberculosis H37Rv]
Identities = 64/203 (31%), Positives = 72/203 (35%), Gaps = 18/203 (8%)
Sequence:
GTGTTACCCGCCCTTTCCGGATACAGCGAGGACCGATCAGGCCTGGTCTTGCCCCTCGGCGAGGAAGAACCA
GGTATCCAGCACCGAGTCGGGGTTCAACGAGACGCTCTCGATGCCCTGCTCCATCAGCCAGCGGGCCAGGTC
CGGGTGGTCCGACGGACCCTGGCCGCAGATGCCGATGTACTTGCCGGCCTTGTTGCAGGCAGCGATGGCGTT
GGCCAGCAGCTTCTTCACCGCCGGATTGCGCTCGTCGAACAGGTGGGCAACGATGCCGGAATCGCGATCCAG
GCCCAGGGTCAGCTGGGTCAGGTCGTTGGAACCGATGGAGAAGCCATCGAAGAACTCGAGGAACTCGTCGGC
CAGCAGGGCGTTCGACGGCAGTTCGCACATCATGATGACCTTCAGTCCGTTCTCGCCGCGCTTCAGGCCGTT
CCCGGCCAGCAGCTCGACCACCTGGCTCGCCTCGCCCAGGGTGCGCACGAAGGGCACCATGATCTCGACGTT
GGTCAGGCCCATTTCGTTGCGGACCTTCTTCAGCGCACGACACTCCAGCTCGAAGCAGTCGCGGAACGACTC
GCTGATGTAGCGCGAGGCGCCACGGAAGCCGAGCATCGGGTTCTCTTCTTCCGGCTCGTAGAGCTTGCCGCC
GATCAGGTTGGCGTACTCATTGGACTTGAAGTCGGACAGGCGCACGATGACCTTCTTCGGCCAGAACGCCGC
GGCCAGGGTGCTGATGCCCTCCACCAGCTTCTCGACGTAGAAGCCGACCGGATCGGGATAGCCGGCGATGCG
CTTCTCCACGCTTTCCTTGATGTCCGCCGGCAGGCCGGCGAAGTTCAGCAACGCCTTGGGGTGCACGCCGAT
CATGCGGTTGATGATGAATTCGAGGCGGGCCAGGCCCACGCCTTCGTTCGGCAACTGGGCGAAATCGAAAGC
GCGATCGGGATTGCCGACGTTCATCATGATCTTGAACGGAAGGTCGGGCATGGCGTCGACCGAGTTCTTGCG
CACATCGAAACCGAGTTCGCCTTCGAAGATGAAGCCGGTATCGCCTTCGGCACAGGAAACGGTCACCCCCTG
CCCATCCTGCAGGATCTGGGTGGCGTTGCCGCAACCGACCACCGCCGGGATGCCCAGTTCGCGAGCGATGAT
CGCCGCGTGGCAGGTACGCCCGCCGCGGTTGGTGACGATGGCGCTGGCGCGCTTCATCACCGGCTCCCAGTC
CGGGTCGGTCATGTCGGAGACCAGGACGTCACCCGGTTGGACCTTGTCCATTTCCGACACGTCGTTGATCAC
CTTGACCGGACCGGCACCGATGCGCTGGCCGATGGCACGTCCTTCCACCAGGACGGTCCCCTTCTCTTTCAG
CAGGTAGCGCTCCATGACCGTGGCGCTGGCGCGGCTCTTCACGGTTTCCGGGCGTGCCTGGACGATGTACAG
CTTGCCGTCGTCACCGTCCTTGGCCCATTCGATGTCCATCGGGCGGCCATAGTGCTTCTCGATGATCATGGC
CTGCTTGGCCAGCTCGGTGACCTCGGCGTCGCTCAGGGCGAAGCGGGCGCGATCGGCGCGATCGACGTCCAC
TACCTTGACCGAGCGACCGGCCTTGGCTTCGTCGCCGTAGATCATCTTGATCGCCTTGCTACCCAGGTTGCG
GCGCAGGATGGCCGGACGCCCGGCTTCCAAGGTCGGCTTGTGGACGTAGAACTCGTCGGGGTTCACCGCGCC
CTGAACCACGGTCTCGCCCAGGCCGTAGGCACCGGTGATGAAGACCACGTCGCGGAAGCCGGATTCGGTGTC
CAGGGTGAACATCACCCCGGCGGTGCCGGTTTCCGAGCGGACCATGCGCTGCACGCCGGCGGACAAGGCGAC
CAGCTTGTGATCGAAGCCCTGGTGCACGCGGTAGGCGATGGCGCGGTCGTTGAACAGGGAGGCAAAGACCTC
TTTTGCTGCGCGGATCACATTGTCCACGCCGCGGATATTGAGGAAGGTTTCCTGCTGGCCGGCGAACGAGGC
GTCCGGAAGGTCTTCGGCGGTAGCGGAGGAACGCACTGCCACGGCGAGGTTGTCGTTGCCGTTGGCCAGGGC
GGCGAAGGCCTGGCGGATCTCGCTGTCGAGACGGGCCGGGAACTCGGCTTCCATCACCCACTGGCGGATCTG
CGCGCCGGTCTTGGCCAGGGCGTTGACGTCGTCGACGTCCAGGGCGTCCAGGGCCGCGTGGATACGGTCGTT
GAGGCCACTCTGCTCGAGGAAGTCACGGTAGGCCTGGGCGGTGGTGGCAAATCCGCCGGGTACGGAAACGCC
GGCACCGGCCAGGTTGCTGATCATCTCGCCGAGGGATGCGTTCTTGCCCCCCACATGCTCTACATCATGGAC
GCCGAGCTTATCGAGGGAAACTACGTACTCTACCAAGGTGATCTCTCCACTATTGAATTGGAAAAGCTCAAG
CGGGGCCAGGAGCAGCTCCGCTGGATTCTGGCCTGGCCCTTAGAAATAAGTGACAATGCTGCGACAGAAAGG
CCTCTGACAACGCGCGGCCTATCATAG
Translation:
MLPALSGYSEDRSGLVLPLGEEEPGIQHRVGVQRDALDALLHQPAGQVRVVRRTLAADADVLAGLVAGSDGV
GQQLLHRRIALVEQVGNDAGIAIQAQGQLGQVVGTDGEAIEELEELVGQQGVRRQFAHHDDLQSVLAALQAV
PGQQLDHLARLAQGAHEGHHDLDVGQAHFVADLLQRTTLQLEAVAERLADVARGATEAEHRVLFFRLVELAA
DQVGVLIGLEVGQAHDDLLRPERRGQGADALHQLLDVEADRIGIAGDALLHAFLDVRRQAGEVQQRLGVHAD
HAVDDEFEAGQAHAFVRQLGEIESAIGIADVHHDLERKVGHGVDRVLAHIETEFAFEDEAGIAFGTGNGHPL
PILQDLGGVAATDHRRDAQFASDDRRVAGTPAAVGDDGAGALHHRLPVRVGHVGDQDVTRLDLVHFRHVVDH
LDRTGTDALADGTSFHQDGPLLFQQVALHDRGAGAALHGFRACLDDVQLAVVTVLGPFDVHRAAIVLLDDHG
LLGQLGDLGVAQGEAGAIGAIDVHYLDRATGLGFVAVDHLDRLATQVAAQDGRTPGFQGRLVDVELVGVHRA
LNHGLAQAVGTGDEDHVAEAGFGVQGEHHPGGAGFRADHALHAGGQGDQLVIEALVHAVGDGAVVEQGGKDL
FCCADHIVHAADIEEGFLLAGERGVRKVFGGSGGTHCHGEVVVAVGQGGEGLADLAVETGRELGFHHPLADL
RAGLGQGVDVVDVQGVQGRVDTVVEATLLEEVTVGLGGGGKSAGYGNAGTGQVADHLAEGCVLAPHMLYIMD
AELIEGNYVLYQGDLSTIELEKLKRGQEQLRWILAWPLEISDNAATERPLTTRGLS*
AnnotationID:5785GeneID:5783
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 08:08:47
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15666
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28697
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48785How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1235684Stop: 1233138
Length: 2547
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTTACCCGCCCTTTCCGGATACAGCGAGGACCGATCAGGCCTGGTCTTGCCCCTCGGCGAGGAAGAACCA
GGTATCCAGCACCGAGTCGGGGTTCAACGAGACGCTCTCGATGCCCTGCTCCATCAGCCAGCGGGCCAGGTC
CGGGTGGTCCGACGGACCCTGGCCGCAGATGCCGATGTACTTGCCGGCCTTGTTGCAGGCAGCGATGGCGTT
GGCCAGCAGCTTCTTCACCGCCGGATTGCGCTCGTCGAACAGGTGGGCAACGATGCCGGAATCGCGATCCAG
GCCCAGGGTCAGCTGGGTCAGGTCGTTGGAACCGATGGAGAAGCCATCGAAGAACTCGAGGAACTCGTCGGC
CAGCAGGGCGTTCGACGGCAGTTCGCACATCATGATGACCTTCAGTCCGTTCTCGCCGCGCTTCAGGCCGTT
CCCGGCCAGCAGCTCGACCACCTGGCTCGCCTCGCCCAGGGTGCGCACGAAGGGCACCATGATCTCGACGTT
GGTCAGGCCCATTTCGTTGCGGACCTTCTTCAGCGCACGACACTCCAGCTCGAAGCAGTCGCGGAACGACTC
GCTGATGTAGCGCGAGGCGCCACGGAAGCCGAGCATCGGGTTCTCTTCTTCCGGCTCGTAGAGCTTGCCGCC
GATCAGGTTGGCGTACTCATTGGACTTGAAGTCGGACAGGCGCACGATGACCTTCTTCGGCCAGAACGCCGC
GGCCAGGGTGCTGATGCCCTCCACCAGCTTCTCGACGTAGAAGCCGACCGGATCGGGATAGCCGGCGATGCG
CTTCTCCACGCTTTCCTTGATGTCCGCCGGCAGGCCGGCGAAGTTCAGCAACGCCTTGGGGTGCACGCCGAT
CATGCGGTTGATGATGAATTCGAGGCGGGCCAGGCCCACGCCTTCGTTCGGCAACTGGGCGAAATCGAAAGC
GCGATCGGGATTGCCGACGTTCATCATGATCTTGAACGGAAGGTCGGGCATGGCGTCGACCGAGTTCTTGCG
CACATCGAAACCGAGTTCGCCTTCGAAGATGAAGCCGGTATCGCCTTCGGCACAGGAAACGGTCACCCCCTG
CCCATCCTGCAGGATCTGGGTGGCGTTGCCGCAACCGACCACCGCCGGGATGCCCAGTTCGCGAGCGATGAT
CGCCGCGTGGCAGGTACGCCCGCCGCGGTTGGTGACGATGGCGCTGGCGCGCTTCATCACCGGCTCCCAGTC
CGGGTCGGTCATGTCGGAGACCAGGACGTCACCCGGTTGGACCTTGTCCATTTCCGACACGTCGTTGATCAC
CTTGACCGGACCGGCACCGATGCGCTGGCCGATGGCACGTCCTTCCACCAGGACGGTCCCCTTCTCTTTCAG
CAGGTAGCGCTCCATGACCGTGGCGCTGGCGCGGCTCTTCACGGTTTCCGGGCGTGCCTGGACGATGTACAG
CTTGCCGTCGTCACCGTCCTTGGCCCATTCGATGTCCATCGGGCGGCCATAGTGCTTCTCGATGATCATGGC
CTGCTTGGCCAGCTCGGTGACCTCGGCGTCGCTCAGGGCGAAGCGGGCGCGATCGGCGCGATCGACGTCCAC
TACCTTGACCGAGCGACCGGCCTTGGCTTCGTCGCCGTAGATCATCTTGATCGCCTTGCTACCCAGGTTGCG
GCGCAGGATGGCCGGACGCCCGGCTTCCAAGGTCGGCTTGTGGACGTAGAACTCGTCGGGGTTCACCGCGCC
CTGAACCACGGTCTCGCCCAGGCCGTAGGCACCGGTGATGAAGACCACGTCGCGGAAGCCGGATTCGGTGTC
CAGGGTGAACATCACCCCGGCGGTGCCGGTTTCCGAGCGGACCATGCGCTGCACGCCGGCGGACAAGGCGAC
CAGCTTGTGATCGAAGCCCTGGTGCACGCGGTAGGCGATGGCGCGGTCGTTGAACAGGGAGGCAAAGACCTC
TTTTGCTGCGCGGATCACATTGTCCACGCCGCGGATATTGAGGAAGGTTTCCTGCTGGCCGGCGAACGAGGC
GTCCGGAAGGTCTTCGGCGGTAGCGGAGGAACGCACTGCCACGGCGAGGTTGTCGTTGCCGTTGGCCAGGGC
GGCGAAGGCCTGGCGGATCTCGCTGTCGAGACGGGCCGGGAACTCGGCTTCCATCACCCACTGGCGGATCTG
CGCGCCGGTCTTGGCCAGGGCGTTGACGTCGTCGACGTCCAGGGCGTCCAGGGCCGCGTGGATACGGTCGTT
GAGGCCACTCTGCTCGAGGAAGTCACGGTAGGCCTGGGCGGTGGTGGCAAATCCGCCGGGTACGGAAACGCC
GGCACCGGCCAGGTTGCTGATCATCTCGCCGAGGGATGCGTTCTTGCCCCCCACATGCTCTACATCATGGAC
GCCGAGCTTATCGAGGGAAACTACGTACTCTACCAAGGTGATCTCTCCACTATTGAATTGGAAAAGCTCAAG
CGGGGCCAGGAGCAGCTCCGCTGGATTCTGGCCTGGCCCTTAGAAATAAGTGACAATGCTGCGACAGAAAGG
CCTCTGACAACGCGCGGCCTATCATAG