ViewGene
Locus Name:
GeneID:
Location:

GeneID:5777
TrivialName: PA14_41940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41940
PAO1 Ortholog Locus:
Sequence Length:753
Protein Length:250
Start: 3745341
Stop: 3744589
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAC47564.1| (AL591792) HYPOTHETICAL CALCIUM-BINDING PROTEIN [Sinorhizobium meliloti]
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Sequence:
GTGCTTCTTGTCCAGCTCGATCGCCTGGTCGAGGGTTTCCAGCAGTGCCTTGCGCACCTTGAGCTTGGTATT
GCGGTGCGCGGTCATGTTGAGTTTCTTCAACTGCTGGGCCGCTGCACGCGCGCTTTCCTGCAACTGGTCGGC
GCTGACCAGGGTGTCGAGGAAGCCGGCATCCACCGCAGCGGCCGGACTGAACATCTCGGCATTGATGACCGA
GCGGGTGAACGCCGACTTGCGCAGGCGATCGCGGGCCAGTTCGATGCCGACATGGTGCATGGTCATGCCGAT
GGCGACTTCGTTCAGGCCGATCTGGAACGGCCCGTCGACGCCGATCCGGTAGTCGGCCGAGAGCAGCAGGAA
GGCGCCCTTGGCTACCGCGTGCCCGGGGCAGGCGACGATCACCGGGTAGGGATGGGAGAGCAGGCGGCGAGC
CAGGGTCGAGCCGGCAGCGACCAGGTTGACGGCATTCTCCGGGCCGGAGGTCATGACCTTCAGGTCGTAGCC
ACCGGAGAGGATGCCCGGCTGGCCGGTGACGATGACCACGGCCTTGTCCTGCAAGGCCTGGTCGAGAGCCTG
GTTGAAGGCGTCGATCACCGCCGGGGAGATGGCGTTCACCTTGCCGTTGTTGAGGGTCAGGGTGGCGATGCC
GTCTTCGAACTGGTAGCTGATCAACTCGCTCATGGCAGGATTCCTTTTGGTGGAGTGGCGCAGACCTTACTG
ATGGCCGCCGTCGGCGTAAAGCGCTTTGGCTGA
Translation:
MLLVQLDRLVEGFQQCLAHLELGIAVRGHVEFLQLLGRCTRAFLQLVGADQGVEEAGIHRSGRTEHLGIDDR
AGERRLAQAIAGQFDADMVHGHADGDFVQADLERPVDADPVVGREQQEGALGYRVPGAGDDHRVGMGEQAAS
QGRAGSDQVDGILRAGGHDLQVVATGEDARLAGDDDHGLVLQGLVESLVEGVDHRRGDGVHLAVVEGQGGDA
VFELVADQLAHGRIPFGGVAQTLLMAAVGVKRFG*
AnnotationID:5779GeneID:5777
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 09:09:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15659




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28685




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48779How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1208568Stop: 1209320

          
Length: 753


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCTTCTTGTCCAGCTCGATCGCCTGGTCGAGGGTTTCCAGCAGTGCCTTGCGCACCTTGAGCTTGGTATT 
GCGGTGCGCGGTCATGTTGAGTTTCTTCAACTGCTGGGCCGCTGCACGCGCGCTTTCCTGCAACTGGTCGGC 
GCTGACCAGGGTGTCGAGGAAGCCGGCATCCACCGCAGCGGCCGGACTGAACATCTCGGCATTGATGACCGA 
GCGGGTGAACGCCGACTTGCGCAGGCGATCGCGGGCCAGTTCGATGCCGACATGGTGCATGGTCATGCCGAT 
GGCGACTTCGTTCAGGCCGATCTGGAACGGCCCGTCGACGCCGATCCGGTAGTCGGCCGAGAGCAGCAGGAA 
GGCGCCCTTGGCTACCGCGTGCCCGGGGCAGGCGACGATCACCGGGTAGGGATGGGAGAGCAGGCGGCGAGC 
CAGGGTCGAGCCGGCAGCGACCAGGTTGACGGCATTCTCCGGGCCGGAGGTCATGACCTTCAGGTCGTAGCC 
ACCGGAGAGGATGCCCGGCTGGCCGGTGACGATGACCACGGCCTTGTCCTGCAAGGCCTGGTCGAGAGCCTG 
GTTGAAGGCGTCGATCACCGCCGGGGAGATGGCGTTCACCTTGCCGTTGTTGAGGGTCAGGGTGGCGATGCC 
GTCTTCGAACTGGTAGCTGATCAACTCGCTCATGGCAGGATTCCTTTTGGTGGAGTGGCGCAGACCTTACTG 
ATGGCCGCCGTCGGCGTAAAGCGCTTTGGCTGA