ViewGene

Locus Name:
GeneID:
Location:

GeneID:5771
TrivialName: PA14_42210
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 09:09:18
LocusName:PA14_42210
PAO1 Ortholog Locus:
Sequence Length:2247
Protein Length:748
Start: 3766267
Stop: 3764021
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP22952.1| (AY272046) hypothetical protein 1 [Rhizobium arachis]
Identities = 251/516 (48%), Positives = 299/516 (57%), Gaps = 1/516 (0%)
Sequence:
ATGTTTTCTCGTTATTGGATAGACGCTCGTCGTGGCGGCGTGACATGTCGCGGCATGCCGCCCGGCGGGCGC
GACATAAGGTGTTCGCAGCGCGGGCGGAAGTCAACGAGACGGCGATGGGCGAATCTGCCGGTTCTGACAGGT
CACGTGGCGCGCCGCTGGCGGCGCTCAGGCGACGCTGGCGAGCAACTGCTCGGCCGGCATCGGCCTGCCGAG
CAGGAAGCCTTGCAGCGAATTGCAGCCGAGGCGGGTCAGGAACTCCTGCTGGGCCTCGGTTTCCACGCCCTC
GGCGACGATCTTCAGGTTCAGCGTGCGGCCGAGGGCGACGATCGCCGAGACGATCGCGGCGTCGTCGCTGTC
GTGGGCCAGCTCGTTGATGAAGCCACGGTCGATCTTCAGTTCGCTCGCCGGCAGGCGCTTGAGATAGAGCAG
GCTGGAGTAGCCGGTGCCGAAGTCGTCGATGGAGATGCCGACGCCCATCGCCGACAACTGCTCGAGGATCAC
CAGGCTGGCATCGGCATCGCGCATGGCGGTCGATTCGGTCACCTCGAGGATCAGGTGGCTGGGCTCCAGGCT
GTGGCGCAGGAGTGCGTTGCGCACCGAGTCGACCAGGCCGGCATGGGCGAACTGCAGGGCCGAAAGGTTCAC
CGCGATGTTCCACTCCGCATGCCCGCCGTCCAGCCAGAGGCGCATCTGCCGGCAGGCTTCGTCGAGCACCCA
CTCGCCGATCTGCACGATCAGGCCGGTTTTTTCCGCCAGCGGCAGGAACTGGTCGGGGGGGATCAGTCCGTG
TTGCGGATGCTCCCAGCGCAGCAGCGCTTCCACGCCGACCATCGGTCCGTTCGGCGCCAGTACCTTGGGTTG
GTAGTGCAAGACCAACTGCCGGCGCTCCAGGGCCTGGCGCAGGTCATGGAGCAGTTGCAACTGTTCCTGGGC
GTTGGCGTTCATCGAACTCTCGAAGAAGCAGTAGCCGTTCCGTCCCTGGTCCTTGGCGTGATACATCGCCGC
GTCGGCATTGATCATCAGTTCGTGGCGGGTCTGCCCGTCGCCGGGGTAGAGCGCGATGCCGATGCTCGCCGA
GATCCGCACCTCGTGGCGGGATATCTGGTACGGCTGGCTGATCCGCTTCACCAGCTTCTCGGCCAGGGTCGC
GGCGTCGGCGGGCTCGCGGGCCTCGATCAGCAGGACGAACTCGTCGCCGCCGAGGCGGGCGATGGTGTCCTG
GGCGCGGACGTTGGCGCGGATACGCTCGGCGACTTCGATCAGCAACAGGTCGCCGAGGTGATGGCCGTAGGC
ATCGTTGACCGCCTTGAAGCCGTCCAGGTCCATGAACAGCACGGCGAACCGGCGATCGTCGCGGATCGCCTG
CTGGATCGCCTGCTCCAGGCGGTCGTCGAGGAGCATGCGGTTGGGCAGCTTGGTCAGGTTGTCGTGCAGGGC
CAACTGGATCAGCTCGCGGTTGGCTCGTGCGAGGGAGGTGGCGAGCACCGAGGTACGCGCCTCCAGGCGCGA
GTCCAGCACCGAGACGATCAGGGCGATGGCGATCACCGCCAGGGTGATCACGATGACCAGCACCGCCAGCCA
GCCGTTGTCGATGCCTCGGCCGGCGGCGCCGCAGAAGCTGCCCAGGGGGAACTGCGCGGCGGCCATCCCGGT
GTAGTGCATGCCGACGATGGCGCAGCCCATCACCAGGGCGGCGCCGGCCCGGACCAGGACGATGCGCCGGCT
GCCATGGCGCAGGCGGAAGGCGATCCACAGCGCGGCGCCGGAGGCGATCACCGCGATCAGGATGGAGAGGCC
GAGCCACAGCGGGTCGTAGACGATCCCCGGCATCATCAGCAGGGCGGCCATCCCGGTGTAGTGCATGGCGGC
GATGCCGCTGCCTATCAGCAGGGCGCCCAGCGCCAGGCGTTGCCAGGGGAGTTCCGCCTGGCACACCAGCCA
GAGGGCGAAGGCCGAACTGCCGACGGCCAGCAGCAGCGACAGCAGGGTCAGGCCCAGGTCGTAGCCGAGCGG
GATCGGCAGGCTGAAGGCGAGCATGCCGACGAAATGCATCGACCAGATGCCGAAGCCCATGGCGAAAGCGCC
GCCGATCAGCCAGGAGAGCGCCTCGCGGCCTTTCGCCAGGGTCACCCGGCCGGCCATGTCGAGAGCGGTGTA
GGACGCCAGGATGGCCACAATCAGGGAAAAGGCGACAAGAACCTGGTTGTAGCTGCTGATAAGCATGAAAGC
GTCCGAACGGGATAG
Translation:
MFSRYWIDARRGGVTCRGMPPGGRDIRCSQRGRKSTRRRWANLPVLTGHVARRWRRSGDAGEQLLGRHRPAE
QEALQRIAAEAGQELLLGLGFHALGDDLQVQRAAEGDDRRDDRGVVAVVGQLVDEATVDLQFARRQALEIEQ
AGVAGAEVVDGDADAHRRQLLEDHQAGIGIAHGGRFGHLEDQVAGLQAVAQECVAHRVDQAGMGELQGRKVH
RDVPLRMPAVQPEAHLPAGFVEHPLADLHDQAGFFRQRQELVGGDQSVLRMLPAQQRFHADHRSVRRQYLGL
VVQDQLPALQGLAQVMEQLQLFLGVGVHRTLEEAVAVPSLVLGVIHRRVGIDHQFVAGLPVAGVERDADARR
DPHLVAGYLVRLADPLHQLLGQGRGVGGLAGLDQQDELVAAEAGDGVLGADVGADTLGDFDQQQVAEVMAVG
IVDRLEAVQVHEQHGEPAIVADRLLDRLLQAVVEEHAVGQLGQVVVQGQLDQLAVGSCEGGGEHRGTRLQAR
VQHRDDQGDGDHRQGDHDDQHRQPAVVDASAGGAAEAAQGELRGGHPGVVHADDGAAHHQGGAGPDQDDAPA
AMAQAEGDPQRGAGGDHRDQDGEAEPQRVVDDPRHHQQGGHPGVVHGGDAAAYQQGAQRQALPGEFRLAHQP
EGEGRTADGQQQRQQGQAQVVAERDRQAEGEHADEMHRPDAEAHGESAADQPGERLAAFRQGHPAGHVESGV
GRQDGHNQGKGDKNLVVAADKHESVRTG*
AnnotationID:5773GeneID:5771
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 09:09:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:11478
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28673
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5771

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
197540 gb|AAP22952.1| (AY272046) hypothetical protein 1 [Rhizobium arachis] 757 33.81 40.55 245 1090.0
GC ORFID: 48773How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1187642Stop: 1189888
Length: 2247
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTTTTCTCGTTATTGGATAGACGCTCGTCGTGGCGGCGTGACATGTCGCGGCATGCCGCCCGGCGGGCGC
GACATAAGGTGTTCGCAGCGCGGGCGGAAGTCAACGAGACGGCGATGGGCGAATCTGCCGGTTCTGACAGGT
CACGTGGCGCGCCGCTGGCGGCGCTCAGGCGACGCTGGCGAGCAACTGCTCGGCCGGCATCGGCCTGCCGAG
CAGGAAGCCTTGCAGCGAATTGCAGCCGAGGCGGGTCAGGAACTCCTGCTGGGCCTCGGTTTCCACGCCCTC
GGCGACGATCTTCAGGTTCAGCGTGCGGCCGAGGGCGACGATCGCCGAGACGATCGCGGCGTCGTCGCTGTC
GTGGGCCAGCTCGTTGATGAAGCCACGGTCGATCTTCAGTTCGCTCGCCGGCAGGCGCTTGAGATAGAGCAG
GCTGGAGTAGCCGGTGCCGAAGTCGTCGATGGAGATGCCGACGCCCATCGCCGACAACTGCTCGAGGATCAC
CAGGCTGGCATCGGCATCGCGCATGGCGGTCGATTCGGTCACCTCGAGGATCAGGTGGCTGGGCTCCAGGCT
GTGGCGCAGGAGTGCGTTGCGCACCGAGTCGACCAGGCCGGCATGGGCGAACTGCAGGGCCGAAAGGTTCAC
CGCGATGTTCCACTCCGCATGCCCGCCGTCCAGCCAGAGGCGCATCTGCCGGCAGGCTTCGTCGAGCACCCA
CTCGCCGATCTGCACGATCAGGCCGGTTTTTTCCGCCAGCGGCAGGAACTGGTCGGGGGGGATCAGTCCGTG
TTGCGGATGCTCCCAGCGCAGCAGCGCTTCCACGCCGACCATCGGTCCGTTCGGCGCCAGTACCTTGGGTTG
GTAGTGCAAGACCAACTGCCGGCGCTCCAGGGCCTGGCGCAGGTCATGGAGCAGTTGCAACTGTTCCTGGGC
GTTGGCGTTCATCGAACTCTCGAAGAAGCAGTAGCCGTTCCGTCCCTGGTCCTTGGCGTGATACATCGCCGC
GTCGGCATTGATCATCAGTTCGTGGCGGGTCTGCCCGTCGCCGGGGTAGAGCGCGATGCCGATGCTCGCCGA
GATCCGCACCTCGTGGCGGGATATCTGGTACGGCTGGCTGATCCGCTTCACCAGCTTCTCGGCCAGGGTCGC
GGCGTCGGCGGGCTCGCGGGCCTCGATCAGCAGGACGAACTCGTCGCCGCCGAGGCGGGCGATGGTGTCCTG
GGCGCGGACGTTGGCGCGGATACGCTCGGCGACTTCGATCAGCAACAGGTCGCCGAGGTGATGGCCGTAGGC
ATCGTTGACCGCCTTGAAGCCGTCCAGGTCCATGAACAGCACGGCGAACCGGCGATCGTCGCGGATCGCCTG
CTGGATCGCCTGCTCCAGGCGGTCGTCGAGGAGCATGCGGTTGGGCAGCTTGGTCAGGTTGTCGTGCAGGGC
CAACTGGATCAGCTCGCGGTTGGCTCGTGCGAGGGAGGTGGCGAGCACCGAGGTACGCGCCTCCAGGCGCGA
GTCCAGCACCGAGACGATCAGGGCGATGGCGATCACCGCCAGGGTGATCACGATGACCAGCACCGCCAGCCA
GCCGTTGTCGATGCCTCGGCCGGCGGCGCCGCAGAAGCTGCCCAGGGGGAACTGCGCGGCGGCCATCCCGGT
GTAGTGCATGCCGACGATGGCGCAGCCCATCACCAGGGCGGCGCCGGCCCGGACCAGGACGATGCGCCGGCT
GCCATGGCGCAGGCGGAAGGCGATCCACAGCGCGGCGCCGGAGGCGATCACCGCGATCAGGATGGAGAGGCC
GAGCCACAGCGGGTCGTAGACGATCCCCGGCATCATCAGCAGGGCGGCCATCCCGGTGTAGTGCATGGCGGC
GATGCCGCTGCCTATCAGCAGGGCGCCCAGCGCCAGGCGTTGCCAGGGGAGTTCCGCCTGGCACACCAGCCA
GAGGGCGAAGGCCGAACTGCCGACGGCCAGCAGCAGCGACAGCAGGGTCAGGCCCAGGTCGTAGCCGAGCGG
GATCGGCAGGCTGAAGGCGAGCATGCCGACGAAATGCATCGACCAGATGCCGAAGCCCATGGCGAAAGCGCC
GCCGATCAGCCAGGAGAGCGCCTCGCGGCCTTTCGCCAGGGTCACCCGGCCGGCCATGTCGAGAGCGGTGTA
GGACGCCAGGATGGCCACAATCAGGGAAAAGGCGACAAGAACCTGGTTGTAGCTGCTGATAAGCATGAAAGC
GTCCGAACGGGATAG