ViewGene
Locus Name:
GeneID:
Location:

GeneID:5768
TrivialName: PA14_42370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42370
PAO1 Ortholog Locus:
Sequence Length:1128
Protein Length:375
Start: 3775576
Stop: 3776703
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA60158.1| (X86404) recF [Azotobacter vinelandii]
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Sequence:
GTGCTCCAGCGGGCTTTCCAGCAGCAGGTCGTCGCCCTGGCGCAGCAACAGGACGCTCTGTCCGTCGATGCG
CAGGTGGTACGAACCCGTCCGATCGGCAACAAAGGGCCCTTGGCCCAGGCGAGTGGCCAATCCGCTCAACAG
ATGATCCATGATTCCTCGGTAGGGCCGGCTTTCGCCGGCCGCTCAGCTCTGCCAGTAGAAGTGATCCTGTGC
CTGGCACAGGTTGCGTTCGTGCAGCCAGGCCTGGACGGCGTCCGCCGCGCCGACGTCGTCGTCCAGCCGGCA
GAGAGGTTGCCAGAGGCATTCGAGGACCTCGGGGATCGGCTCGAAGCCGGCCAGCCCGCCGCTGGCGAGCAG
CGTCGCCATTCCCCGCTGCCAGTTCGGCCAGGCGCTCTTCGCCAATGCCGAAGCCGTCTCCAGCTTGCCGGC
CAGTTCGGCCACCTGTTCCTGGGTGCGCGCCTGGCACTTGGCGACCCTGGCCAGTTCCTCGCGGGCCTGCTC
CGGCTCCAGCTCGGCCACGCGGGACCAGAATTCGGACTTGATTCGCAGTTGCCGGGACTGGGTCTCCAGCTC
CACCAGCGACAGGCGCCAGCCGGGGATCGCCTGGTCGAGCAGGCTTTCCCACCAGCCATAGACCGGCAGCAG
GACCCAATCGATCATCGACTGCGGCACGGCGAGGTTGACCCGATCGCCCAGTTCGGCGCACCAGCCGTCGTC
GTCCTGCGCCGCGCAGAGGAGAATCTGCCGCACCTCTTCGCGCCCCAGTGCCAGGCCGCGCGCCAGGCGCTG
CTGCAACCATTCGCAGCGGAACAGTTGCTCCAGCCGCAGGCGCGGCAGCATCCGCTGCAGCAACGCCAGTTG
CCGCGCACTGATGATTCCGGACTCACGATACAAACTGCTCGATGCGTAACCCGGCACCCGACCCCGCGAGCG
GGCGTCCGAGCCCACCACGGATACCCGCCTGCCGGCGAACACCGCTTCTCGGGAGTACTGCTTATCGTCTTC
CTGCTCCATTCTCTGCCTTGGCTTCCTCACTACATTGCGCGCTCGTCAGAGCCTGCAATTTGGGCCGATTCT
ACTCATGCAGCCGCTACCGGGCTTTCAAAAAACGTCAGTTATTTTTAG
Translation:
MLQRAFQQQVVALAQQQDALSVDAQVVRTRPIGNKGPLAQASGQSAQQMIHDSSVGPAFAGRSALPVEVILC
LAQVAFVQPGLDGVRRADVVVQPAERLPEAFEDLGDRLEAGQPAAGEQRRHSPLPVRPGALRQCRSRLQLAG
QFGHLFLGARLALGDPGQFLAGLLRLQLGHAGPEFGLDSQLPGLGLQLHQRQAPAGDRLVEQAFPPAIDRQQ
DPIDHRLRHGEVDPIAQFGAPAVVVLRRAEENLPHLFAPQCQAARQALLQPFAAEQLLQPQARQHPLQQRQL
PRTDDSGLTIQTARCVTRHPTPRAGVRAHHGYPPAGEHRFSGVLLIVFLLHSLPWLPHYIARSSEPAIWADS
THAAATGLSKNVSYF*
AnnotationID:5770GeneID:5768
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15651




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28667




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48770How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1178333Stop: 1177206

          
Length: 1128


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCTCCAGCGGGCTTTCCAGCAGCAGGTCGTCGCCCTGGCGCAGCAACAGGACGCTCTGTCCGTCGATGCG 
CAGGTGGTACGAACCCGTCCGATCGGCAACAAAGGGCCCTTGGCCCAGGCGAGTGGCCAATCCGCTCAACAG 
ATGATCCATGATTCCTCGGTAGGGCCGGCTTTCGCCGGCCGCTCAGCTCTGCCAGTAGAAGTGATCCTGTGC 
CTGGCACAGGTTGCGTTCGTGCAGCCAGGCCTGGACGGCGTCCGCCGCGCCGACGTCGTCGTCCAGCCGGCA 
GAGAGGTTGCCAGAGGCATTCGAGGACCTCGGGGATCGGCTCGAAGCCGGCCAGCCCGCCGCTGGCGAGCAG 
CGTCGCCATTCCCCGCTGCCAGTTCGGCCAGGCGCTCTTCGCCAATGCCGAAGCCGTCTCCAGCTTGCCGGC 
CAGTTCGGCCACCTGTTCCTGGGTGCGCGCCTGGCACTTGGCGACCCTGGCCAGTTCCTCGCGGGCCTGCTC 
CGGCTCCAGCTCGGCCACGCGGGACCAGAATTCGGACTTGATTCGCAGTTGCCGGGACTGGGTCTCCAGCTC 
CACCAGCGACAGGCGCCAGCCGGGGATCGCCTGGTCGAGCAGGCTTTCCCACCAGCCATAGACCGGCAGCAG 
GACCCAATCGATCATCGACTGCGGCACGGCGAGGTTGACCCGATCGCCCAGTTCGGCGCACCAGCCGTCGTC 
GTCCTGCGCCGCGCAGAGGAGAATCTGCCGCACCTCTTCGCGCCCCAGTGCCAGGCCGCGCGCCAGGCGCTG 
CTGCAACCATTCGCAGCGGAACAGTTGCTCCAGCCGCAGGCGCGGCAGCATCCGCTGCAGCAACGCCAGTTG 
CCGCGCACTGATGATTCCGGACTCACGATACAAACTGCTCGATGCGTAACCCGGCACCCGACCCCGCGAGCG 
GGCGTCCGAGCCCACCACGGATACCCGCCTGCCGGCGAACACCGCTTCTCGGGAGTACTGCTTATCGTCTTC 
CTGCTCCATTCTCTGCCTTGGCTTCCTCACTACATTGCGCGCTCGTCAGAGCCTGCAATTTGGGCCGATTCT 
ACTCATGCAGCCGCTACCGGGCTTTCAAAAAACGTCAGTTATTTTTAG