ViewGene
Locus Name:
GeneID:
Location:

GeneID:5766
TrivialName: PA14_42560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42560
PAO1 Ortholog Locus:
Sequence Length:960
Protein Length:319
Start: 3786728
Stop: 3787687
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGCCCCGCTCCCCTGTCACCAGCACCTGCCAGAGCGCCCCCACCTGCTCCGCCAGGCCGCCGAGCACGCG
CAGCTTGTGCATGTCGCTCATGACCCGCTCCAGCTTCACCGGATCGAGCCGGCTCGACTGACTGTCCAGGTC
GGCGCTCAGGGCTTTCTGCAGGAAGGCCACGACCCGCTCCAGCGGCGTCGCGGCGAAGCGCGCCTGGATGTC
CTGCCAGGCCGCCGACAGGCCCCGGTAGTCGAGTACCGCGTCACGGTAGGTATCGCGCAGCGCCTGGATATC
GCCGACACCGGCGGCGGAAGCCTCGGCGGCCAGCGGCTCGATGCGCAGGCCGAGTTCGATCTCCAGGCCCTG
CTCGTCGGCCATCCGCAGCAACGCCTGGTCGACCAGCGCCAGCATCGCCCGCGCCTCCGGCCGCCCGGCCAG
GACGTCGCGCGCCCGCGACAGCGCCAGGAAGCGCTGGCTGATCTCGCTGGAGAAGCCCTCCAGGTAAGCACT
GAGCTGCGCCAGGCTGCTCAGTTGGCCGCTGCCCAGGTGGGCGATCAGCGCCTCGAGCTTCTGCTGGCTTTC
CAGGTCCGGAATGCGCTTCCAGTACTCCTGCAGCATGGCCTGGACTTCGCTCAGGCGCGCATGGGCGTCGCT
CAGGCGGCGCTTGGCCAGGGATTTCTCGGCGCGCTCAGAAAAGGCGAAGGTCAGCTCTTCCGCGGCATCGGC
CAGCGACTGCGAAACGGAAACGTAGTGGACGCGCTCGCCCTGAAAGCTGCCGCCAGCCTGCTGCGCGGGGGC
GTTGGCCGCTTCCCGCGGCGCGAGGGGCGCGGCGGAGGAACTCTGGAGGATGTCCATCGTGGCTGTGGTTCC
TGGTCTGCAAAGGCGGCGCAGTATAGGAACCGGCCCGGTGCCGCCGATGCCAATATCGGCCGGTTTTTTTTA
GCCGCGGCGGCAACCGATTTCTAA
Translation:
MAPLPCHQHLPERPHLLRQAAEHAQLVHVAHDPLQLHRIEPARLTVQVGAQGFLQEGHDPLQRRRGEARLDV
LPGRRQAPVVEYRVTVGIAQRLDIADTGGGSLGGQRLDAQAEFDLQALLVGHPQQRLVDQRQHRPRLRPPGQ
DVARPRQRQEALADLAGEALQVSTELRQAAQLAAAQVGDQRLELLLAFQVRNALPVLLQHGLDFAQARMGVA
QAALGQGFLGALRKGEGQLFRGIGQRLRNGNVVDALALKAAASLLRGGVGRFPRREGRGGGTLEDVHRGCGS
WSAKAAQYRNRPGAADANIGRFFLAAAATDF*
AnnotationID:5768GeneID:5766
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 06:06:32
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11468




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28663




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48768How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1167181Stop: 1166222

          
Length: 960


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCCCCGCTCCCCTGTCACCAGCACCTGCCAGAGCGCCCCCACCTGCTCCGCCAGGCCGCCGAGCACGCG 
CAGCTTGTGCATGTCGCTCATGACCCGCTCCAGCTTCACCGGATCGAGCCGGCTCGACTGACTGTCCAGGTC 
GGCGCTCAGGGCTTTCTGCAGGAAGGCCACGACCCGCTCCAGCGGCGTCGCGGCGAAGCGCGCCTGGATGTC 
CTGCCAGGCCGCCGACAGGCCCCGGTAGTCGAGTACCGCGTCACGGTAGGTATCGCGCAGCGCCTGGATATC 
GCCGACACCGGCGGCGGAAGCCTCGGCGGCCAGCGGCTCGATGCGCAGGCCGAGTTCGATCTCCAGGCCCTG 
CTCGTCGGCCATCCGCAGCAACGCCTGGTCGACCAGCGCCAGCATCGCCCGCGCCTCCGGCCGCCCGGCCAG 
GACGTCGCGCGCCCGCGACAGCGCCAGGAAGCGCTGGCTGATCTCGCTGGAGAAGCCCTCCAGGTAAGCACT 
GAGCTGCGCCAGGCTGCTCAGTTGGCCGCTGCCCAGGTGGGCGATCAGCGCCTCGAGCTTCTGCTGGCTTTC 
CAGGTCCGGAATGCGCTTCCAGTACTCCTGCAGCATGGCCTGGACTTCGCTCAGGCGCGCATGGGCGTCGCT 
CAGGCGGCGCTTGGCCAGGGATTTCTCGGCGCGCTCAGAAAAGGCGAAGGTCAGCTCTTCCGCGGCATCGGC 
CAGCGACTGCGAAACGGAAACGTAGTGGACGCGCTCGCCCTGAAAGCTGCCGCCAGCCTGCTGCGCGGGGGC 
GTTGGCCGCTTCCCGCGGCGCGAGGGGCGCGGCGGAGGAACTCTGGAGGATGTCCATCGTGGCTGTGGTTCC 
TGGTCTGCAAAGGCGGCGCAGTATAGGAACCGGCCCGGTGCCGCCGATGCCAATATCGGCCGGTTTTTTTTA 
GCCGCGGCGGCAACCGATTTCTAA