ViewGene
Locus Name:
GeneID:
Location:

GeneID:5763
TrivialName: PA14_42800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42800
PAO1 Ortholog Locus:
Sequence Length:975
Protein Length:324
Start: 3805941
Stop: 3806915
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD84529.1| (BX321858) mono valent cation-transporting P-type ATPase [Nitrosomonas europaea ATCC 19718]
Identities = 55/171 (32%), Positives = 74/171 (43%), Gaps = 22/171 (12%)
Sequence:
GTGCTCGCGGCACTGCGCGGCGGACAGCATGAACACCCCGTGGCCGCCGTGCTCGAACTCCAGCCAGGTGAA
GTCCACTTCCGGATAAAGCGCTTGCACATGGACCTCGCTGTTGCCTACCTCGACGATCAGCAGGCCTTTCTC
GCTGAGGTGGTCGGCCGCCTCGGCGAGCATCCGTCGCACCAGGTCCAGGCCGTCGTCACCGCAGGCCAGGCC
GAGTTCAGGCTCATGATGGAACTCCGCCGGCATGTCGGCGAAGTCCTCGGCATCCACGTAGGGCGGATTGGA
CACGATCAGGTCGAAGCGCTGGCCGGGCAGCCCGGCGAAACCGTCGCCCTGGACGGTGTAGACCCGCTCGCC
GAGGTCGTGGCGCTCGATATTGACGTTGGCCACTTCCAGCGCATCGAAGGACAGGTCGGCGAGCACCACCTC
CGCCTGCTCGAACGCATAGGCGCAGGCGATGCCAATGCAGCCGGAACCGGTGCAGAGGTCGAGGATTCGCGC
CGGCTCGGCCGGCAGCCAGGGCGCGAAGCGCTGTTCGATAAGTTCGGCGATAGGCGAGCGCGGCACCAGCAC
GCGTTCGTCGACGCTGAAGGGAATCCCGCAGAACCAGGCTTCGCCCAGCAGGTAGGCCGCCGGAATCCGTTC
CTCGATGCGCCGCCGGAGGATCTCCGCCAGCTCGGCGCGTTCATCGTCTTCCAGGCGACAATCCAGGTAGCT
GTCAGAAATTTCCCAGGGAAGGTGCAGGGAGCCCAGAACCAGGTGGCGCGCCTCGTCCCAGGCATTGTCGGT
GCCGTGACCGAAGAACAGGCCGGCGGCGTGGAAACGGCTGACAGCCCAGCGGATGTAGTCGCGCAGGGTGAG
CAGACGGGACTCGGACATGACGGAATTGCTCCTCGCAACGCACAAAAGGGCGACATTCTAGCCGATCGCGCC
GGAGCTGGCCTCCAGCGCGGGAAGTCCATACCACTTTAG
Translation:
MLAALRGGQHEHPVAAVLELQPGEVHFRIKRLHMDLAVAYLDDQQAFLAEVVGRLGEHPSHQVQAVVTAGQA
EFRLMMELRRHVGEVLGIHVGRIGHDQVEALAGQPGETVALDGVDPLAEVVALDIDVGHFQRIEGQVGEHHL
RLLERIGAGDANAAGTGAEVEDSRRLGRQPGREALFDKFGDRRARHQHAFVDAEGNPAEPGFAQQVGRRNPF
LDAPPEDLRQLGAFIVFQATIQVAVRNFPGKVQGAQNQVARLVPGIVGAVTEEQAGGVETADSPADVVAQGE
QTGLGHDGIAPRNAQKGDILADRAGAGLQRGKSIPL*
AnnotationID:5765GeneID:5763
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15647




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28657




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48765How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1147968Stop: 1146994

          
Length: 975


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCTCGCGGCACTGCGCGGCGGACAGCATGAACACCCCGTGGCCGCCGTGCTCGAACTCCAGCCAGGTGAA 
GTCCACTTCCGGATAAAGCGCTTGCACATGGACCTCGCTGTTGCCTACCTCGACGATCAGCAGGCCTTTCTC 
GCTGAGGTGGTCGGCCGCCTCGGCGAGCATCCGTCGCACCAGGTCCAGGCCGTCGTCACCGCAGGCCAGGCC 
GAGTTCAGGCTCATGATGGAACTCCGCCGGCATGTCGGCGAAGTCCTCGGCATCCACGTAGGGCGGATTGGA 
CACGATCAGGTCGAAGCGCTGGCCGGGCAGCCCGGCGAAACCGTCGCCCTGGACGGTGTAGACCCGCTCGCC 
GAGGTCGTGGCGCTCGATATTGACGTTGGCCACTTCCAGCGCATCGAAGGACAGGTCGGCGAGCACCACCTC 
CGCCTGCTCGAACGCATAGGCGCAGGCGATGCCAATGCAGCCGGAACCGGTGCAGAGGTCGAGGATTCGCGC 
CGGCTCGGCCGGCAGCCAGGGCGCGAAGCGCTGTTCGATAAGTTCGGCGATAGGCGAGCGCGGCACCAGCAC 
GCGTTCGTCGACGCTGAAGGGAATCCCGCAGAACCAGGCTTCGCCCAGCAGGTAGGCCGCCGGAATCCGTTC 
CTCGATGCGCCGCCGGAGGATCTCCGCCAGCTCGGCGCGTTCATCGTCTTCCAGGCGACAATCCAGGTAGCT 
GTCAGAAATTTCCCAGGGAAGGTGCAGGGAGCCCAGAACCAGGTGGCGCGCCTCGTCCCAGGCATTGTCGGT 
GCCGTGACCGAAGAACAGGCCGGCGGCGTGGAAACGGCTGACAGCCCAGCGGATGTAGTCGCGCAGGGTGAG 
CAGACGGGACTCGGACATGACGGAATTGCTCCTCGCAACGCACAAAAGGGCGACATTCTAGCCGATCGCGCC 
GGAGCTGGCCTCCAGCGCGGGAAGTCCATACCACTTTAG