ViewGene

Locus Name:
GeneID:
Location:

GeneID:5749
TrivialName: PA14_43450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43450
PAO1 Ortholog Locus:
Sequence Length:1875
Protein Length:624
Start: 3870415
Stop: 3872289
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 171/604 (28%), Positives = 202/604 (33%), Gaps = 128/604 (21%)
Sequence:
TTGCGACCTGATCGTCGCCGGCGAGTCGGCACAGTTCGCCCAGCCGGAGATCAAGGTCGGGGTGATGCCGGG
TGCCGGCGGCACCCAGCGCCTGGTACGGGCGGTGGGCAAGTTCCAGGCGCTGCGCATGCTGTTCACCGGCTG
CCTGGTGAAGGCTCCGCAAGCGCTGGCCATGGGCCTGGTCAGCGAAGTGGTGGCGGACGAGTCGACGCTGGC
GCGCGCCCTGGAACTGGCCACGGAGATCGCCCGCCTGCCCCCTCTGGCGCTGGCGCAGATCAAGGAGGTGGT
CCTGGCCGGTGCCGACCTGCCGCTGGACAGTGCCCTGGCCCTGGAACGCAAGGCGTTCCAGTTGCTGTTCGA
CTCGCAGGACCAGAAGGAAGGCATGCACGCCTTCCTGGAGAAACGCCCGCCGAACTACCAGGGGAAATAGAC
GATGCCCGATATTCGTTGTATCGCCGTGGTCGGTACCGGTGCGATGGGCACCGGGATCGCCCAGATCGCCGC
CCAGGCCGGCCTGACCGTGTGGCTGTTCGACAGCCGCGCCGAGGCCGCCGCCGAGGCACGCCAGCGCCTGCG
GCAGACCTTCGAGAGTCTATGCGGCAAAGGCAAGCTGAGCGCCGCCGACGCCGAGGCCGCGCAAAACCGGCT
GCGGGTGGCGGAACGCCTGGAACAACTGGGCGACTGCGAACTGGTGGTGGAGGCCATCGTCGAGCGCCTGGA
GGCCAAGCAGGAATTGCTGCGCCGGCTGGAAGCCATAGTCGCGCCGGAGACCATCCTCGCCAGCAATACCTC
GTCGTTGTCGATCACCGCCATCGCCGCCGCCTGCGAGCGGCCGCAGCGGATCGCCGGCTTTCACTTCTTCAA
CCCGGTGCCGCTGATGCGCGTGGTCGAGGTGGTCGACGGCCTGGCCAGCGCTCCGGAAGTCGGCGACGCCCT
GCTCGCCCTCGCCGCGCGCCTGGGCCACCGCGGTGTACGGACCAAGGACAGCCCCGGCTTCATCGTCAACCA
TGCCGGCCGCGCCTATGGCACCGAGGCCCTGCGCATCCTCGGCGAAGGCGTCGCCGAATGCGCCGAGATCGA
CCGTGTGCTGCGCGAGTGCGCCGGCTTCCGCATGGGGCCGTTCGAACTGCTCGATCTCACCGGCCTCGACGT
GTCGCACCCGGTAATGGAATCGATCTACCAGCAGTACTACCAGGAACCGCGCTACCGCCCGCACCCGCTGAC
CCGCCAGTTGCTCGCCGCCGGCCGTCTCGGGCGCAAGAGCGGCCAGGGCTTCTATCGCTACGTCGACGGCCA
GCCGCAGGACAAGCCCGGTCCGCAACCGGTGCCGCAGGCCGCCATCCGGCCCCCGGTGTGGCTGGGCTGCGA
AAACGAGGACGACCGCCGCACGCTCGCCGAACTGCTGCATCGCCTCGGCGTCGAGCCGGAAACCGGCGAACG
CCCTTCCGCCGCAGCACTCTGCCTGCTGGCCGCCTGGGGCGAGGACCTGAGCAGCGCCGTGCAGCGCTTCGC
CTGTCCCGCCGAGCGCAGCGTCGGCATCGACCTGCTCTGCGACCTCGAGCGCCGGCGCTGCCTGATGCTCTC
GCCGCTGACCGCCCCGGCCATGCGCGACGCGGCACACGCGCTACTGGCTGGCGACGGCGTCGGGGTCACGGT
GCTGCGCGACAGTCCCGGCTTCGTCGTCCAGCGGGTACTGGCGATGATCGTCAACCTCGCCTGCGACATCGC
CCAGCAGGGCATTGCCAGCGTCGAGGATATCGACCAGGCGGTGCACCTCGGCCTCGGCTATCCCCACGGCCC
GCTGGAATGGGGCGACCGCCTCGGCCCGCGGCGCCTGCTGAGCATTCTCCAGCGCCTGCAGGCGCTTACCGG
TGA
Translation:
MRPDRRRRVGTVRPAGDQGRGDAGCRRHPAPGTGGGQVPGAAHAVHRLPGEGSASAGHGPGQRSGGGRVDAG
ARPGTGHGDRPPAPSGAGADQGGGPGRCRPAAGQCPGPGTQGVPVAVRLAGPEGRHARLPGETPAELPGEID
DARYSLYRRGRYRCDGHRDRPDRRPGRPDRVAVRQPRRGRRRGTPAPAADLRESMRQRQAERRRRRGRAKPA
AGGGTPGTTGRLRTGGGGHRRAPGGQAGIAAPAGSHSRAGDHPRQQYLVVVDHRHRRRLRAAAADRRLSLLQ
PGAADARGRGGRRPGQRSGSRRRPARPRRAPGPPRCTDQGQPRLHRQPCRPRLWHRGPAHPRRRRRRMRRDR
PCAARVRRLPHGAVRTARSHRPRRVAPGNGIDLPAVLPGTALPPAPADPPVARRRPSRAQERPGLLSLRRRP
AAGQARSATGAAGRHPAPGVAGLRKRGRPPHARRTAASPRRRAGNRRTPFRRSTLPAGRLGRGPEQRRAALR
LSRRAQRRHRPALRPRAPALPDALAADRPGHARRGTRATGWRRRRGHGAARQSRLRRPAGTGDDRQPRLRHR
PAGHCQRRGYRPGGAPRPRLSPRPAGMGRPPRPAAPAEHSPAPAGAYR*
AnnotationID:5751GeneID:5749
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 15:03:04
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15628
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28629
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48751How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1083494Stop: 1081620
Length: 1875
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGACCTGATCGTCGCCGGCGAGTCGGCACAGTTCGCCCAGCCGGAGATCAAGGTCGGGGTGATGCCGGG
TGCCGGCGGCACCCAGCGCCTGGTACGGGCGGTGGGCAAGTTCCAGGCGCTGCGCATGCTGTTCACCGGCTG
CCTGGTGAAGGCTCCGCAAGCGCTGGCCATGGGCCTGGTCAGCGAAGTGGTGGCGGACGAGTCGACGCTGGC
GCGCGCCCTGGAACTGGCCACGGAGATCGCCCGCCTGCCCCCTCTGGCGCTGGCGCAGATCAAGGAGGTGGT
CCTGGCCGGTGCCGACCTGCCGCTGGACAGTGCCCTGGCCCTGGAACGCAAGGCGTTCCAGTTGCTGTTCGA
CTCGCAGGACCAGAAGGAAGGCATGCACGCCTTCCTGGAGAAACGCCCGCCGAACTACCAGGGGAAATAGAC
GATGCCCGATATTCGTTGTATCGCCGTGGTCGGTACCGGTGCGATGGGCACCGGGATCGCCCAGATCGCCGC
CCAGGCCGGCCTGACCGTGTGGCTGTTCGACAGCCGCGCCGAGGCCGCCGCCGAGGCACGCCAGCGCCTGCG
GCAGACCTTCGAGAGTCTATGCGGCAAAGGCAAGCTGAGCGCCGCCGACGCCGAGGCCGCGCAAAACCGGCT
GCGGGTGGCGGAACGCCTGGAACAACTGGGCGACTGCGAACTGGTGGTGGAGGCCATCGTCGAGCGCCTGGA
GGCCAAGCAGGAATTGCTGCGCCGGCTGGAAGCCATAGTCGCGCCGGAGACCATCCTCGCCAGCAATACCTC
GTCGTTGTCGATCACCGCCATCGCCGCCGCCTGCGAGCGGCCGCAGCGGATCGCCGGCTTTCACTTCTTCAA
CCCGGTGCCGCTGATGCGCGTGGTCGAGGTGGTCGACGGCCTGGCCAGCGCTCCGGAAGTCGGCGACGCCCT
GCTCGCCCTCGCCGCGCGCCTGGGCCACCGCGGTGTACGGACCAAGGACAGCCCCGGCTTCATCGTCAACCA
TGCCGGCCGCGCCTATGGCACCGAGGCCCTGCGCATCCTCGGCGAAGGCGTCGCCGAATGCGCCGAGATCGA
CCGTGTGCTGCGCGAGTGCGCCGGCTTCCGCATGGGGCCGTTCGAACTGCTCGATCTCACCGGCCTCGACGT
GTCGCACCCGGTAATGGAATCGATCTACCAGCAGTACTACCAGGAACCGCGCTACCGCCCGCACCCGCTGAC
CCGCCAGTTGCTCGCCGCCGGCCGTCTCGGGCGCAAGAGCGGCCAGGGCTTCTATCGCTACGTCGACGGCCA
GCCGCAGGACAAGCCCGGTCCGCAACCGGTGCCGCAGGCCGCCATCCGGCCCCCGGTGTGGCTGGGCTGCGA
AAACGAGGACGACCGCCGCACGCTCGCCGAACTGCTGCATCGCCTCGGCGTCGAGCCGGAAACCGGCGAACG
CCCTTCCGCCGCAGCACTCTGCCTGCTGGCCGCCTGGGGCGAGGACCTGAGCAGCGCCGTGCAGCGCTTCGC
CTGTCCCGCCGAGCGCAGCGTCGGCATCGACCTGCTCTGCGACCTCGAGCGCCGGCGCTGCCTGATGCTCTC
GCCGCTGACCGCCCCGGCCATGCGCGACGCGGCACACGCGCTACTGGCTGGCGACGGCGTCGGGGTCACGGT
GCTGCGCGACAGTCCCGGCTTCGTCGTCCAGCGGGTACTGGCGATGATCGTCAACCTCGCCTGCGACATCGC
CCAGCAGGGCATTGCCAGCGTCGAGGATATCGACCAGGCGGTGCACCTCGGCCTCGGCTATCCCCACGGCCC
GCTGGAATGGGGCGACCGCCTCGGCCCGCGGCGCCTGCTGAGCATTCTCCAGCGCCTGCAGGCGCTTACCGG
TGA