ViewGene

Locus Name:
GeneID:
Location:

GeneID:5747
TrivialName: PA14_43500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43500
PAO1 Ortholog Locus:
Sequence Length:1161
Protein Length:386
Start: 3874446
Stop: 3873286
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAB84182.1| (AL162754) IgA1 protease [Neisseria meningitidis Z2491]
Identities = 86/336 (25%), Positives = 131/336 (38%), Gaps = 42/336 (12%)
Sequence:
GTGTTCGCTGCGGGCCCCCACGTACTGGCTGCGCCCGGCGCCGAGGCCGAACAGGGTGGCGGCGATGGCGAC
GCCGATGAAGATATAGCCGACCGCGTTCCAGCCGCCGGTCAGGTCGTGGACCACGCCGACCATGAACGGCCC
CATGGCCGCCAGGGTGTAGCCGACGCCCTGGGCCATGCCCGACAGATGCGAGGCGACGTGGGCGTCGCGCGA
GCGCAGGACGATCAGCGCCAGGGCGATGCTGAAGGTGCCGCCCTGGCCGAGGCCGAGCAGGACCGCCCAGCC
CCAGATGGTCGGCAGCGGTGCATAGAGGAAGCCGAGCAGGCCGGCGAGGGTGGTAGCCATCACCAGCACCAC
CGCCAGGCGCTGGTCCCTGGCGCGAGCGGCGAGCCAGGGCGCGAGCAGGGCGGTGATCAGTTGCAGCATCAC
CGAGCCGGACAGCACCAGGCCGGCTTCCACCGCAGTCATGCCGCGGTCGATCAGGATCGACGGCAGCCAACC
GAAGACGATGTAGGCCAGGGACGACTGCAGGCCCATGTACAGCGTGACCTGCCAGGCCAGCGGGTCGCGCCA
CAGGCCGACGACACGGAAGGCCTGGCGATGGGCGTGCTGGCCCTGGCGGGTCTGCGGCAGCCAGAAGGCGGC
GGCGAGGATCGCCGGCAGCGACCAGAACGCCAGCGCCAGTTCCCAGTTGCCGAAGAGCTTCTCCAGCGGCGC
GGTGGCGCCGGCGGCGAGCGCTGCGCCCAGGCACAGGGCCATGGTGTAGACCCCGGTCATCACCCCGGCCTG
GCGCGGGAAGTCGCGTTTGACGATGCCCGGCAGGAGCACGCCGATGATGCCGATGCTGGCGCCGGCCAGGAC
GCTGCCGGCGAACAGGCCGAACACCGGGAACAGGCTGCGCAGGACGATGCCGCCGGCCAGGCAGAAGAGGAT
CAGCAGCACGCTGCGTTCGGCGCCGATACGCCGGGCCAGGCGCGGCGCGAGCGGCGCGAACAACCCCAGGCA
GAGTACCGGCGCGGTGGTCAGCAGGCCGGCGGCGGCGGCCGAGAGGCCGGTATCGTCGCGTACCTGGTTGAG
CAGGGGGGCGAGGCTGGACAGCGCCGGGCGCAGGTTCAGCGCCACCAGCACCAGGCCCAGCAGGAGCAGCCA
GGGGCGTAG
Translation:
MFAAGPHVLAAPGAEAEQGGGDGDADEDIADRVPAAGQVVDHADHERPHGRQGVADALGHARQMRGDVGVAR
AQDDQRQGDAEGAALAEAEQDRPAPDGRQRCIEEAEQAGEGGSHHQHHRQALVPGASGEPGREQGGDQLQHH
RAGQHQAGFHRSHAAVDQDRRQPTEDDVGQGRLQAHVQRDLPGQRVAPQADDTEGLAMGVLALAGLRQPEGG
GEDRRQRPERQRQFPVAEELLQRRGGAGGERCAQAQGHGVDPGHHPGLAREVAFDDARQEHADDADAGAGQD
AAGEQAEHREQAAQDDAAGQAEEDQQHAAFGADTPGQARRERREQPQAEYRRGGQQAGGGGREAGIVAYLVE
QGGEAGQRRAQVQRHQHQAQQEQPGA*
AnnotationID:5749GeneID:5747
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 12:12:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15626
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28625
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48749How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1079463Stop: 1080623
Length: 1161
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTTCGCTGCGGGCCCCCACGTACTGGCTGCGCCCGGCGCCGAGGCCGAACAGGGTGGCGGCGATGGCGAC
GCCGATGAAGATATAGCCGACCGCGTTCCAGCCGCCGGTCAGGTCGTGGACCACGCCGACCATGAACGGCCC
CATGGCCGCCAGGGTGTAGCCGACGCCCTGGGCCATGCCCGACAGATGCGAGGCGACGTGGGCGTCGCGCGA
GCGCAGGACGATCAGCGCCAGGGCGATGCTGAAGGTGCCGCCCTGGCCGAGGCCGAGCAGGACCGCCCAGCC
CCAGATGGTCGGCAGCGGTGCATAGAGGAAGCCGAGCAGGCCGGCGAGGGTGGTAGCCATCACCAGCACCAC
CGCCAGGCGCTGGTCCCTGGCGCGAGCGGCGAGCCAGGGCGCGAGCAGGGCGGTGATCAGTTGCAGCATCAC
CGAGCCGGACAGCACCAGGCCGGCTTCCACCGCAGTCATGCCGCGGTCGATCAGGATCGACGGCAGCCAACC
GAAGACGATGTAGGCCAGGGACGACTGCAGGCCCATGTACAGCGTGACCTGCCAGGCCAGCGGGTCGCGCCA
CAGGCCGACGACACGGAAGGCCTGGCGATGGGCGTGCTGGCCCTGGCGGGTCTGCGGCAGCCAGAAGGCGGC
GGCGAGGATCGCCGGCAGCGACCAGAACGCCAGCGCCAGTTCCCAGTTGCCGAAGAGCTTCTCCAGCGGCGC
GGTGGCGCCGGCGGCGAGCGCTGCGCCCAGGCACAGGGCCATGGTGTAGACCCCGGTCATCACCCCGGCCTG
GCGCGGGAAGTCGCGTTTGACGATGCCCGGCAGGAGCACGCCGATGATGCCGATGCTGGCGCCGGCCAGGAC
GCTGCCGGCGAACAGGCCGAACACCGGGAACAGGCTGCGCAGGACGATGCCGCCGGCCAGGCAGAAGAGGAT
CAGCAGCACGCTGCGTTCGGCGCCGATACGCCGGGCCAGGCGCGGCGCGAGCGGCGCGAACAACCCCAGGCA
GAGTACCGGCGCGGTGGTCAGCAGGCCGGCGGCGGCGGCCGAGAGGCCGGTATCGTCGCGTACCTGGTTGAG
CAGGGGGGCGAGGCTGGACAGCGCCGGGCGCAGGTTCAGCGCCACCAGCACCAGGCCCAGCAGGAGCAGCCA
GGGGCGTAG