ViewGene

Locus Name:
GeneID:
Location:

GeneID:5739
TrivialName: PA14_43960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43960
PAO1 Ortholog Locus:
Sequence Length:1164
Protein Length:387
Start: 3912189
Stop: 3913352
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
TTGCTGGGCAGCGTCGGTCAGGCTGGTTGCCGCGATGATGTTCAGGCCGCTTTCGGCCAGGACCTTGGCACC
CAGTTCAGCGTTGTTGCCTTCCAGGCGGACGACAACCGGAACCTTCACGCCGACTTCTTTGACGGCGCCGAT
GATGCCTTCGGCGATCATGTCGCAACGCACGATGCCGCCGAAGATGTTCACCAGGACAGCCTTCACGTTGCT
GTCGGACAGGATGATCTTGAACGCTTCGGTCACGCGCTCCTTGGTCGCACCGCCGCCAACGTCGAGGAAGTT
GGCCGGCTTGCCGCCGTGCAGGTTGACGATGTCCATGGTACCCATGGCCAGGCCGGCGCCGTTGACCATGCA
GCCGATGTTGCCTTCCAGCGCGACGTAGTTCAGCTCCCACTTCTGCGCATGGGCTTCACGGGCGTCGTCCTG
GGACGGGTCGTGCATGGCGCGCAGCTTCGGCTGACGGTACAGGGCGTTGCTGTCGATGTTGATCTTGGCATC
CAGGCAGTGCAGGTTGCCGTCTTTCTTGATCACCAGCGGGTTCACTTCCAGCAGGGCCAGGTCGTAGTCCTG
GAACAGCTTCGCCAGGCCGACGAAGATATGGGTGAACTGCTTGATCTGGTCGCCCTTCAGGCCCAGTTGGAA
GGCCAGCTCGCGGCCCTGGTACGGCTGCGCGCCGACCAGCGGGTCGATGGTGACCTTGAGGATCTTCTCGGG
AGTGTCGTGGGCGACCTTCTCGATGTCCACGCCACCTTCGGTGGAAGCCATGAACACGATGCGGCGGCTGGA
ACGATCGACGACGGCGCCGAGGTACAGCTCCTTGTCGATGTCGGTGCAGGACTCCACCAGGATCTTGCTGAC
CGGCTGGCCGTTGGCGTCGGTCTGGTAGGTCACCAGGTTCTTGCCCAGCCACTGCTGGGCGAACGCCTTGGC
GTCCTCTTTGCTCTTCACCAGCTTCACACCGCCCGCTTTACCGCGGCCGCCGGCGTGCACCTGAGCTTTGAC
GACCCACTCGCTGCCGCCGATCTTGTCGCAGGCTTCTGCGGCCTCTTCGGGGGTGTCTACGGCAAAGCCCTT
GGATACAGGCAGGCCGTATTCAGCGAACAGCTGCTTACCCTGATATTCGTGGAGATTCATGCTTGTCTACCG
TTATTCGTCTAG
Translation:
MLGSVGQAGCRDDVQAAFGQDLGTQFSVVAFQADDNRNLHADFFDGADDAFGDHVATHDAAEDVHQDSLHVA
VGQDDLERFGHALLGRTAANVEEVGRLAAVQVDDVHGTHGQAGAVDHAADVAFQRDVVQLPLLRMGFTGVVL
GRVVHGAQLRLTVQGVAVDVDLGIQAVQVAVFLDHQRVHFQQGQVVVLEQLRQADEDMGELLDLVALQAQLE
GQLAALVRLRADQRVDGDLEDLLGSVVGDLLDVHATFGGSHEHDAAAGTIDDGAEVQLLVDVGAGLHQDLAD
RLAVGVGLVGHQVLAQPLLGERLGVLFALHQLHTARFTAAAGVHLSFDDPLAAADLVAGFCGLFGGVYGKAL
GYRQAVFSEQLLTLIFVEIHACLPLFV*
AnnotationID:5741GeneID:5739
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 14:02:53
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15613
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28609
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48741How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1041720Stop: 1040557
Length: 1164
Start Codon: TTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCTGGGCAGCGTCGGTCAGGCTGGTTGCCGCGATGATGTTCAGGCCGCTTTCGGCCAGGACCTTGGCACC
CAGTTCAGCGTTGTTGCCTTCCAGGCGGACGACAACCGGAACCTTCACGCCGACTTCTTTGACGGCGCCGAT
GATGCCTTCGGCGATCATGTCGCAACGCACGATGCCGCCGAAGATGTTCACCAGGACAGCCTTCACGTTGCT
GTCGGACAGGATGATCTTGAACGCTTCGGTCACGCGCTCCTTGGTCGCACCGCCGCCAACGTCGAGGAAGTT
GGCCGGCTTGCCGCCGTGCAGGTTGACGATGTCCATGGTACCCATGGCCAGGCCGGCGCCGTTGACCATGCA
GCCGATGTTGCCTTCCAGCGCGACGTAGTTCAGCTCCCACTTCTGCGCATGGGCTTCACGGGCGTCGTCCTG
GGACGGGTCGTGCATGGCGCGCAGCTTCGGCTGACGGTACAGGGCGTTGCTGTCGATGTTGATCTTGGCATC
CAGGCAGTGCAGGTTGCCGTCTTTCTTGATCACCAGCGGGTTCACTTCCAGCAGGGCCAGGTCGTAGTCCTG
GAACAGCTTCGCCAGGCCGACGAAGATATGGGTGAACTGCTTGATCTGGTCGCCCTTCAGGCCCAGTTGGAA
GGCCAGCTCGCGGCCCTGGTACGGCTGCGCGCCGACCAGCGGGTCGATGGTGACCTTGAGGATCTTCTCGGG
AGTGTCGTGGGCGACCTTCTCGATGTCCACGCCACCTTCGGTGGAAGCCATGAACACGATGCGGCGGCTGGA
ACGATCGACGACGGCGCCGAGGTACAGCTCCTTGTCGATGTCGGTGCAGGACTCCACCAGGATCTTGCTGAC
CGGCTGGCCGTTGGCGTCGGTCTGGTAGGTCACCAGGTTCTTGCCCAGCCACTGCTGGGCGAACGCCTTGGC
GTCCTCTTTGCTCTTCACCAGCTTCACACCGCCCGCTTTACCGCGGCCGCCGGCGTGCACCTGAGCTTTGAC
GACCCACTCGCTGCCGCCGATCTTGTCGCAGGCTTCTGCGGCCTCTTCGGGGGTGTCTACGGCAAAGCCCTT
GGATACAGGCAGGCCGTATTCAGCGAACAGCTGCTTACCCTGATATTCGTGGAGATTCATGCTTGTCTACCG
TTATTCGTCTAG