ViewGene
Locus Name:
GeneID:
Location:

GeneID:5728
TrivialName: PA14_44600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44600
PAO1 Ortholog Locus:
Sequence Length:1119
Protein Length:372
Start: 3969462
Stop: 3970580
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD55302.1| (AL939112) putative integral membrane efflux protein [Streptomyces coelicolor A3(2)]
Identities = 44/130 (33%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Sequence:
ATGGCGCAGCACCTGGAACTTGCCGATCGGCTTGCCGAACGCTTCTCGCTCGCGCGCCCAGCGCAGCGACTC
CTCCAGAGCCAGTTGCGCGGTCATGTTGGCCATCACCGCCAGGGCCAGGCGCTCGCTCTGGAAATTGGCCAT
GATGCAGGCGAAGCCAGCGTTCTCCACGCCGATCAGGTTTTCCGCAGGCACCCGGCAGTCGTCGAAGAACAG
TTCGGCGGTATCCGACGCCCACCAGCCCATCTTCTTCAGCTTGCGGCCGACACTGAACCCGGCAGTGCCCTT
CTCCACCAGCAGCAGGCTGATGCCGGCGAAACCCTCGCCGCCGGTACGCACCGCCACCGTGTAGTAGTCCGC
GCGCACGCCGCTGGTGATGAAGGTCTTGCTGCCGCTGACGCGATAGTGATCGCCATCGCGCACCGCACGGGT
CTTCAGGTTGGCCACGTCGGAGCCGCCAGAGGGCTCGGTGACCGCCAGGGCCATGATCTTCTCGCCGCGCAG
CACCGCCGGCACCACCCGCTCGCGCACCTCGGGACGGGCCCACTTGACCACCGGAGGCAAGCCGATATCCAG
CGATCCCAACCCGGCGACCAAGCCGCCGGAACCGCAGCGCATGAGCTCTTCGCTGGCCGCCACCTTGGCGAA
CAGATCGCCTTCGCAACTGCCGCCGTAGGCTTCCGGGTAGCCGATGCCGAGGATCCCGGCCGCGCCGGCCTT
GAGATAGAGTTCACGGGGAAATTCCTCGGCCTCCTCCCATTCATCGATGTGCGGCAACACCTCGCGCTCGAC
GAAACGGCGCACCGAATCCCGGATCAGTTGATGGGACTCGTCGAAGTACTGCTGGAAGTCAGTCATGGCCGG
GCTCCTGATGGGAGCCTCAGAACTTACCTAGCGCTTGCTTGGTTTTCAATACGGGAAACTGGCCATCGGCGA
GGGCGTATAGGCCGCCCTTCCTACGGACACGGGAGGCACAGAGCTCAGGAGATCGGCCGCCGTCCGGCCAGG
GCGTGGGCCAAGGTGCCGCCATCGACCAGCTCCAGCTCGCCACCCAGCGGCACGCCATGGGCGATACGCGAC
AAGGTCAGGCCGCGGCCGGCCAGTAGCTGGGCGATATAG
Translation:
MAQHLELADRLAERFSLARPAQRLLQSQLRGHVGHHRQGQALALEIGHDAGEASVLHADQVFRRHPAVVEEQ
FGGIRRPPAHLLQLAADTEPGSALLHQQQADAGETLAAGTHRHRVVVRAHAAGDEGLAAADAIVIAIAHRTG
LQVGHVGAARGLGDRQGHDLLAAQHRRHHPLAHLGTGPLDHRRQADIQRSQPGDQAAGTAAHELFAGRHLGE
QIAFATAAVGFRVADAEDPGRAGLEIEFTGKFLGLLPFIDVRQHLALDETAHRIPDQLMGLVEVLLEVSHGR
APDGSLRTYLALAWFSIRETGHRRGRIGRPSYGHGRHRAQEIGRRPARAWAKVPPSTSSSSPPSGTPWAIRD
KVRPRPASSWAI*
AnnotationID:5730GeneID:5728
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11400




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28587




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48730How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 984447Stop: 983329

          
Length: 1119


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCGCAGCACCTGGAACTTGCCGATCGGCTTGCCGAACGCTTCTCGCTCGCGCGCCCAGCGCAGCGACTC 
CTCCAGAGCCAGTTGCGCGGTCATGTTGGCCATCACCGCCAGGGCCAGGCGCTCGCTCTGGAAATTGGCCAT 
GATGCAGGCGAAGCCAGCGTTCTCCACGCCGATCAGGTTTTCCGCAGGCACCCGGCAGTCGTCGAAGAACAG 
TTCGGCGGTATCCGACGCCCACCAGCCCATCTTCTTCAGCTTGCGGCCGACACTGAACCCGGCAGTGCCCTT 
CTCCACCAGCAGCAGGCTGATGCCGGCGAAACCCTCGCCGCCGGTACGCACCGCCACCGTGTAGTAGTCCGC 
GCGCACGCCGCTGGTGATGAAGGTCTTGCTGCCGCTGACGCGATAGTGATCGCCATCGCGCACCGCACGGGT 
CTTCAGGTTGGCCACGTCGGAGCCGCCAGAGGGCTCGGTGACCGCCAGGGCCATGATCTTCTCGCCGCGCAG 
CACCGCCGGCACCACCCGCTCGCGCACCTCGGGACGGGCCCACTTGACCACCGGAGGCAAGCCGATATCCAG 
CGATCCCAACCCGGCGACCAAGCCGCCGGAACCGCAGCGCATGAGCTCTTCGCTGGCCGCCACCTTGGCGAA 
CAGATCGCCTTCGCAACTGCCGCCGTAGGCTTCCGGGTAGCCGATGCCGAGGATCCCGGCCGCGCCGGCCTT 
GAGATAGAGTTCACGGGGAAATTCCTCGGCCTCCTCCCATTCATCGATGTGCGGCAACACCTCGCGCTCGAC 
GAAACGGCGCACCGAATCCCGGATCAGTTGATGGGACTCGTCGAAGTACTGCTGGAAGTCAGTCATGGCCGG 
GCTCCTGATGGGAGCCTCAGAACTTACCTAGCGCTTGCTTGGTTTTCAATACGGGAAACTGGCCATCGGCGA 
GGGCGTATAGGCCGCCCTTCCTACGGACACGGGAGGCACAGAGCTCAGGAGATCGGCCGCCGTCCGGCCAGG 
GCGTGGGCCAAGGTGCCGCCATCGACCAGCTCCAGCTCGCCACCCAGCGGCACGCCATGGGCGATACGCGAC 
AAGGTCAGGCCGCGGCCGGCCAGTAGCTGGGCGATATAG