ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5694

TrivialName: PA14_46040

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_46040

PAO1 Ortholog Locus:

Sequence Length: 1374

Protein Length: 457

Start: 4094773

Stop: 4096146

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 123/448 (27%), Positives = 161/448 (35%), Gaps = 92/448 (20%)

Sequence:

TTGCGACGGCGCCTACGCGCAATCGGAAGACTACCGGCGCTTCTGGGAACGCCTGCGGCGCGGCGAACACTT
TTCCGGCCGCTGCAAGCGCATTACCCGCGAGGGCCGGCCACTCTGGCTGGAAGCCACCTACAACCCCGTACG
CGACGGGCAGGGTCGACTGCTCAAGGTGGTCAAGTACGCCAGCGACATCGATGCCATCGTCCACCAGGAACA
CGAGATGCAGAGCAAGCTGGATGCCCTGTCCCGCTCGATGGCGATGATCGAGTTCGACCTCGACGGCAATGT
CCTCGCGGCCAACGACAACTTCCTCGCCACCATGGGCTATGGCCGAGCCGAGCTGGCCAGCGCCAACCACCG
TCAGTTCTGCGAACCGGGCTACCGCGACGGCCCGCAGTACGCCGACCTCTGGCGCCGCCTGAACCGCGGCGA
GTACGTTACCGGGCAGTTCCGCCGGGTCCACCGCAACGGCCAGCCGGTCTGGCTGGAAGCCAGCTACAACCC
GGTCTACGACGCCGACGGCAAGCTGTTCAAGGTGGTCAAGTTCGCCAGCGACGTCAGCGACCGCATGCGCCG
CTACCAGGCCGAGGCGGACAACGCCCACCAGGCCCACACCCTGTCCACCGAGACCCGCACCGTCGCCGAACA
CGGCGCGCTGATCATCCAGAGCGCGGTGGAGGAAATGCTCAAGATCGCGAATACCCTGGATGCTTCCTCGCT
GAACATCGGCGAACTGTCACAGCACTCGCAACAGATCACCTCGATCGTCAACACCATCCGCGAGATCGCCGA
GCAGACCAACCTGCTCGCCCTCAATGCCGCCATCGAGGCCGCCCGCGCCGGCGACCAGGGTCGCGGCTTCGC
CGTGGTGGCCGACGAGGTGCGGCAACTGGCGGAGCGCACCAGCAAGTCGACCAAGGAGATCGCCGACATGAT
CGGTCGCATCCAGACCGGCACCCGCAGCGTCATCGACGACATGCAGCACAGCCAGGAACAGGCACGGCGCGG
CGTGGAGCTGGCCAACGAGGCCGGCACGGCGATCCTCGGCATCCGCGAGAGCACGCACAAGGTGGTGGAGGC
GGTGCAGCAGTTCTCGCGCACCCTCAACGCCGATCTCTAGGGCTCAGGCCAGGCTCATCTGCGTCCGCAACT
GGTCGCGGAAGGCCTGGATCAGCGGCTCGCGCGAGCGGCCGCGGCGGAGGATCAGGGAGAATGGCGCCTGGT
AGCCGAAGGTCGCCGGCAGCAGGGCGCGCAGACGGCCCTGCTCGACCCACGGGTGGGCGTAGTGCTCCGGCA
GGTAGCCGATGTAGCCGCCGGACAGGATCAGGATCAGTTGCGCCTCCATGCTCTCCACCGTCCCCGCGCTGT
GCTTGA

Translation:

MRRRLRAIGRLPALLGTPAARRTLFRPLQAHYPRGPATLAGSHLQPRTRRAGSTAQGGQVRQRHRCHRPPGT
RDAEQAGCPVPLDGDDRVRPRRQCPRGQRQLPRHHGLWPSRAGQRQPPSVLRTGLPRRPAVRRPLAPPEPRR
VRYRAVPPGPPQRPAGLAGSQLQPGLRRRRQAVQGGQVRQRRQRPHAPLPGRGGQRPPGPHPVHRDPHRRRT
RRADHPERGGGNAQDREYPGCFLAEHRRTVTALATDHLDRQHHPRDRRADQPARPQCRHRGRPRRRPGSRLR
RGGRRGAATGGAHQQVDQGDRRHDRSHPDRHPQRHRRHAAQPGTGTARRGAGQRGRHGDPRHPREHAQGGGG
GAAVLAHPQRRSLGLRPGSSASATGRGRPGSAARASGRGGGSGRMAPGSRRSPAAGRADGPARPTGGRSAPA
GSRCSRRTGSGSVAPPCSPPSPRCA*

AnnotationID:5696 GeneID:5694

AnnotatorUID: diggins

Modification Date/Time: 2005-01-24 20:08:25

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15562

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28520

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37370

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5694_cdd.html

URL:

GC ORFID: `48696`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `859136`	Stop: `857763`
Length: `1374`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGACGGCGCCTACGCGCAATCGGAAGACTACCGGCGCTTCTGGGAACGCCTGCGGCGCGGCGAACACTT TTCCGGCCGCTGCAAGCGCATTACCCGCGAGGGCCGGCCACTCTGGCTGGAAGCCACCTACAACCCCGTACG CGACGGGCAGGGTCGACTGCTCAAGGTGGTCAAGTACGCCAGCGACATCGATGCCATCGTCCACCAGGAACA CGAGATGCAGAGCAAGCTGGATGCCCTGTCCCGCTCGATGGCGATGATCGAGTTCGACCTCGACGGCAATGT CCTCGCGGCCAACGACAACTTCCTCGCCACCATGGGCTATGGCCGAGCCGAGCTGGCCAGCGCCAACCACCG TCAGTTCTGCGAACCGGGCTACCGCGACGGCCCGCAGTACGCCGACCTCTGGCGCCGCCTGAACCGCGGCGA GTACGTTACCGGGCAGTTCCGCCGGGTCCACCGCAACGGCCAGCCGGTCTGGCTGGAAGCCAGCTACAACCC GGTCTACGACGCCGACGGCAAGCTGTTCAAGGTGGTCAAGTTCGCCAGCGACGTCAGCGACCGCATGCGCCG CTACCAGGCCGAGGCGGACAACGCCCACCAGGCCCACACCCTGTCCACCGAGACCCGCACCGTCGCCGAACA CGGCGCGCTGATCATCCAGAGCGCGGTGGAGGAAATGCTCAAGATCGCGAATACCCTGGATGCTTCCTCGCT GAACATCGGCGAACTGTCACAGCACTCGCAACAGATCACCTCGATCGTCAACACCATCCGCGAGATCGCCGA GCAGACCAACCTGCTCGCCCTCAATGCCGCCATCGAGGCCGCCCGCGCCGGCGACCAGGGTCGCGGCTTCGC CGTGGTGGCCGACGAGGTGCGGCAACTGGCGGAGCGCACCAGCAAGTCGACCAAGGAGATCGCCGACATGAT CGGTCGCATCCAGACCGGCACCCGCAGCGTCATCGACGACATGCAGCACAGCCAGGAACAGGCACGGCGCGG CGTGGAGCTGGCCAACGAGGCCGGCACGGCGATCCTCGGCATCCGCGAGAGCACGCACAAGGTGGTGGAGGC GGTGCAGCAGTTCTCGCGCACCCTCAACGCCGATCTCTAGGGCTCAGGCCAGGCTCATCTGCGTCCGCAACT GGTCGCGGAAGGCCTGGATCAGCGGCTCGCGCGAGCGGCCGCGGCGGAGGATCAGGGAGAATGGCGCCTGGT AGCCGAAGGTCGCCGGCAGCAGGGCGCGCAGACGGCCCTGCTCGACCCACGGGTGGGCGTAGTGCTCCGGCA GGTAGCCGATGTAGCCGCCGGACAGGATCAGGATCAGTTGCGCCTCCATGCTCTCCACCGTCCCCGCGCTGT GCTTGA