ViewGene

Locus Name:
GeneID:
Location:

GeneID:5677
TrivialName: PA14_46790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46790
PAO1 Ortholog Locus:
Sequence Length:1128
Protein Length:375
Start: 4168289
Stop: 4167162
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAC46447.1| (AL591788) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Identities = 76/277 (27%), Positives = 113/277 (40%), Gaps = 43/277 (15%)
Sequence:
ATGGATCGCCTGGCCGGCGAGATCGAGCAGCAGCACGCCGAGAATCAGCGCCGCCAGCGAATGCGCGCCGAG
GGCGAGCGGCAGCCAGGACAGCAGCAACAGCAGCAGGGCGCCGCCGCTGAGCGCCTGGGCGTGGCCGCGATC
GGCGAGGCTGCCGGCCCGCGCCGCGCCCAGCGCGCCGAGCGCGCCGACCAGGCCGAAGGCGCCGATGGCGCT
GTGCGACAGCGAATACGGCGGCGCGCCGAGCAGCAATACCAGGCTGCTCCAGAACACCCCGAAGGCGGCGAA
CATCAACAGCCCGAGCAGGCCGCGCACCTGCAGCACGCGCTGGCTCGCCAGCAGGCCGAACATCGAGCCGAG
CAGCTGCCGGTAGGACAGCCCCAGTTCGTTGCTCGGCTCCGCCGGCAGTACCCGCCAGAGCAGCAGGCCAAG
CCCGCCCATGCTCGCTGCCGAGACCAGATAGACGCTGCGCCAGCCGCCGAGGTCGGCGAGCAGCCCGGCCAG
GCTGCGCGCCAGCAGCAGGCCGATCACCACGCCGCCCTGCGCCGCGCCGACCACCCGCCCGCGCTCGCCAGG
CGCCGCCAGCGCCGCGGCGTAGGCCAGCAGTCCCTGGGTCATGGCGGTGCCGAGCAGGCCCAGTCCGAGCAG
CCCCAGCGCCAGGCCGAGGGTATCGCCGGCGAAGCCCACCAGCAGCAGCGACAGCACCAGCAGCAGGAGCTG
GACGAACATCAGCCGGCGCCGCTCCAGCAGGTCGCCCAGCGGCACCACCAGCAGCAGCGCCAGGGCGCAACC
GGCTTGGGTCGCGCCGAACAGCAGGCCGACCCCGGCCTGGCTGATGGCGAACTCGGCACCGAGGACGTCCAG
CAGCGGCTGGGCGTAATAGACGTTGGCCACGCTGAGACCGCAGGCGACGGCGAACAGCAGCACCAGCGCGGA
GGGGAGGGAGGATGGCGAGGATGGCATGCGAAGCGCTCCGTAAGGTTTCAATATGAAACTATGCGGAGGCTA
GGAATTTTGGTTTTAAAATGCAACTTAAATTATCGCGGCAGTGCGTCTATCGATCGCGACTCGCGCACAGCG
GAACGCgGgcCcgcccgcCGATTCACACCTGGCGGCGGGCCCGCGTAG
Translation:
MDRLAGEIEQQHAENQRRQRMRAEGERQPGQQQQQQGAAAERLGVAAIGEAAGPRRAQRAERADQAEGADGA
VRQRIRRRAEQQYQAAPEHPEGGEHQQPEQAAHLQHALARQQAEHRAEQLPVGQPQFVARLRRQYPPEQQAK
PAHARCRDQIDAAPAAEVGEQPGQAARQQQADHHAALRRADHPPALARRRQRRGVGQQSLGHGGAEQAQSEQ
PQRQAEGIAGEAHQQQRQHQQQELDEHQPAPLQQVAQRHHQQQRQGATGLGRAEQQADPGLADGELGTEDVQ
QRLGVIDVGHAETAGDGEQQHQRGGEGGWRGWHAKRSVRFQYETMRRLGILVLKCNLNYRGSASIDRDSRTA
ERGPARRFTPGGGPA*
AnnotationID:5679GeneID:5677
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:11306
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28485
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48679How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 785620Stop: 786747
Length: 1128
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGATCGCCTGGCCGGCGAGATCGAGCAGCAGCACGCCGAGAATCAGCGCCGCCAGCGAATGCGCGCCGAG
GGCGAGCGGCAGCCAGGACAGCAGCAACAGCAGCAGGGCGCCGCCGCTGAGCGCCTGGGCGTGGCCGCGATC
GGCGAGGCTGCCGGCCCGCGCCGCGCCCAGCGCGCCGAGCGCGCCGACCAGGCCGAAGGCGCCGATGGCGCT
GTGCGACAGCGAATACGGCGGCGCGCCGAGCAGCAATACCAGGCTGCTCCAGAACACCCCGAAGGCGGCGAA
CATCAACAGCCCGAGCAGGCCGCGCACCTGCAGCACGCGCTGGCTCGCCAGCAGGCCGAACATCGAGCCGAG
CAGCTGCCGGTAGGACAGCCCCAGTTCGTTGCTCGGCTCCGCCGGCAGTACCCGCCAGAGCAGCAGGCCAAG
CCCGCCCATGCTCGCTGCCGAGACCAGATAGACGCTGCGCCAGCCGCCGAGGTCGGCGAGCAGCCCGGCCAG
GCTGCGCGCCAGCAGCAGGCCGATCACCACGCCGCCCTGCGCCGCGCCGACCACCCGCCCGCGCTCGCCAGG
CGCCGCCAGCGCCGCGGCGTAGGCCAGCAGTCCCTGGGTCATGGCGGTGCCGAGCAGGCCCAGTCCGAGCAG
CCCCAGCGCCAGGCCGAGGGTATCGCCGGCGAAGCCCACCAGCAGCAGCGACAGCACCAGCAGCAGGAGCTG
GACGAACATCAGCCGGCGCCGCTCCAGCAGGTCGCCCAGCGGCACCACCAGCAGCAGCGCCAGGGCGCAACC
GGCTTGGGTCGCGCCGAACAGCAGGCCGACCCCGGCCTGGCTGATGGCGAACTCGGCACCGAGGACGTCCAG
CAGCGGCTGGGCGTAATAGACGTTGGCCACGCTGAGACCGCAGGCGACGGCGAACAGCAGCACCAGCGCGGA
GGGGAGGGAGGATGGCGAGGATGGCATGCGAAGCGCTCCGTAAGGTTTCAATATGAAACTATGCGGAGGCTA
GGAATTTTGGTTTTAAAATGCAACTTAAATTATCGCGGCAGTGCGTCTATCGATCGCGACTCGCGCACAGCG
GAACGCgGgcCcgcccgcCGATTCACACCTGGCGGCGGGCCCGCGTAG