ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5671

TrivialName: PA14_47220

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_47220

PAO1 Ortholog Locus:

Sequence Length: 1569

Protein Length: 522

Start: 4207168

Stop: 4208736

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK49004.1| (AY033403) USC3-5p [Myxococcus xanthus] Identities = 91/221 (41%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Sequence:

GTGACCCGAGAGTCAGTGTCTATCGGCCTGCAACTGTACCCCTGCCGTTCGTCCAGATGCGCCAACTGTATC
CGCCGCCGGGCCGGCGCTAACGCGCAGGCGCCAGAGCAGCGCGGCGGCCAGCAGGGCGCTGGCTCCGGCCAC
CAGCATAGCCAGACGGAAGCCCTCGGCCAGCGCGGCCGGCAGCTCGGCGTCGAGCCCCGCCAGGGAACCAGG
CAAGCGATGGGCCGTGATCGCCTGGGTGGCGAGCCGTTGCGCATCGGCAATCCCCAGCTCCTCCAGCCGATC
GCCCAGGACGACGATCGCCCGCCCGCTCAGCAGCGCTCCCAGCAACGCGATGCCGACGGCCATGCCGGCCTG
GCGCAGGGTATTCATGGTCGCCGAGGCCATCCCGGAACGCTCGCGGGCCACGCTCGCCATGACCGCCAGACC
GGTGCCGGGAACGGCCAGGCCCATGCCCAGGCCGAGCGCCACCAGCAACAGGCCGACCCAGGGATACGCGGT
TCCCGTACCGCAAGCGGCCAGCGCCAGCATGGCCAGGCCGATCACCAGGTAGCCCAGCACCAGCAGGCGTCG
CAGCGGTACGTGCCGCTGCAACCGGCCGAACAGCATGGACAGTGCGCCCATGGCGAGGAACTGCGGCGCCAG
GTAGAAGCCGGCCTGCTGCGCCGAGGCACCCTGCACCTGCTGGAAGAACAGGGAGAGGAAGAACAGGCTGGC
GTAGCCGGAAAAACCGAGGACGAACGAGGCCAGGTTGCAGACGGCGAACCCGGCCTGGCGGAACAACCCCAG
GGGCAGCAGCGGTCGGGCGGTCCGCCGCTCGACGAAGAGGAAGCCAAGCAGGCCGACCCCGGCCAGGAGCAG
CGCCGGCCAGGCCGTGGGAGACAACCAGCCGCCCTCTCCCGCGGCGATCAGGGCGTAGGTCAACGCCCCCAG
CCAGACCACGCTGAGCAGCTGCCCCAGGGGATCGAAGGCGGCGTGCTCGGGGTGCGCGGTTTCCTCGATGCC
CCACAGGCCCAGGGCGAGCGCCAGCAGGCCGAGCGGCAGGTTGATCAGGAAGATGCTCTGCCAGCCGGCGTG
CTCCACCAGCAGGCCGCCGAGCAGCGGGCCGAGGATCAGCGACAGCGCGCTGAAGGAGGTCCAGCCGCCGAT
CACCTGGGCGCGCTGGCCGGGATCGTGGAAAGCCTGGGTAAGGATCGACAGCGCGCCGGGTATCAACAGCGC
CCCGGCGATGCCCTGGACCGCGCGTCCGAACAGCAGCAGCGGCAGCGAGGTGGCCAGCGCGCAGAGCAGCGA
ACCGAAGCTGAACAGGCCGACCCCGAGCAGCCAGGTGAGCTTGCGACCGTAGCGGTCGCTCAGCGGTCCGGA
AGACAGCATGAAGGCGCTCAGGCACAGCGCATAGGCGTCGACCACCCACTGCAGGCCGGCCAGGTCGGTATC
CAGGGCGTACTGCAGCGTCGGCAGGGCGAGGTTGACGATGCTGATGTCGAGCGAGGCGATGAAGGTTCCCAG
GTAGATGGCGGCGACCAGGGCGACACGACGCGAAGGGTTCATGGAGTACTCCGATGA

Translation:

MTRESVSIGLQLYPCRSSRCANCIRRRAGANAQAPEQRGGQQGAGSGHQHSQTEALGQRGRQLGVEPRQGTR
QAMGRDRLGGEPLRIGNPQLLQPIAQDDDRPPAQQRSQQRDADGHAGLAQGIHGRRGHPGTLAGHARHDRQT
GAGNGQAHAQAERHQQQADPGIRGSRTASGQRQHGQADHQVAQHQQASQRYVPLQPAEQHGQCAHGEELRRQ
VEAGLLRRGTLHLLEEQGEEEQAGVAGKTEDERGQVADGEPGLAEQPQGQQRSGGPPLDEEEAKQADPGQEQ
RRPGRGRQPAALSRGDQGVGQRPQPDHAEQLPQGIEGGVLGVRGFLDAPQAQGERQQAERQVDQEDALPAGV
LHQQAAEQRAEDQRQRAEGGPAADHLGALAGIVESLGKDRQRAGYQQRPGDALDRASEQQQRQRGGQRAEQR
TEAEQADPEQPGELATVAVAQRSGRQHEGAQAQRIGVDHPLQAGQVGIQGVLQRRQGEVDDADVERGDEGSQ
VDGGDQGDTTRRVHGVLR*

AnnotationID:5673 GeneID:5671

AnnotatorUID: diggins

Modification Date/Time: 2005-02-23 06:06:50

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15539

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28473

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:5671

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

197515 gb|AAK49004.1| (AY033403) USC3-5p [Myxococcus xanthus] 645 23.41 31.47 193 382.0

GC ORFID: `48673`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `746741`	Stop: `745173`
Length: `1569`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGACCCGAGAGTCAGTGTCTATCGGCCTGCAACTGTACCCCTGCCGTTCGTCCAGATGCGCCAACTGTATC CGCCGCCGGGCCGGCGCTAACGCGCAGGCGCCAGAGCAGCGCGGCGGCCAGCAGGGCGCTGGCTCCGGCCAC CAGCATAGCCAGACGGAAGCCCTCGGCCAGCGCGGCCGGCAGCTCGGCGTCGAGCCCCGCCAGGGAACCAGG CAAGCGATGGGCCGTGATCGCCTGGGTGGCGAGCCGTTGCGCATCGGCAATCCCCAGCTCCTCCAGCCGATC GCCCAGGACGACGATCGCCCGCCCGCTCAGCAGCGCTCCCAGCAACGCGATGCCGACGGCCATGCCGGCCTG GCGCAGGGTATTCATGGTCGCCGAGGCCATCCCGGAACGCTCGCGGGCCACGCTCGCCATGACCGCCAGACC GGTGCCGGGAACGGCCAGGCCCATGCCCAGGCCGAGCGCCACCAGCAACAGGCCGACCCAGGGATACGCGGT TCCCGTACCGCAAGCGGCCAGCGCCAGCATGGCCAGGCCGATCACCAGGTAGCCCAGCACCAGCAGGCGTCG CAGCGGTACGTGCCGCTGCAACCGGCCGAACAGCATGGACAGTGCGCCCATGGCGAGGAACTGCGGCGCCAG GTAGAAGCCGGCCTGCTGCGCCGAGGCACCCTGCACCTGCTGGAAGAACAGGGAGAGGAAGAACAGGCTGGC GTAGCCGGAAAAACCGAGGACGAACGAGGCCAGGTTGCAGACGGCGAACCCGGCCTGGCGGAACAACCCCAG GGGCAGCAGCGGTCGGGCGGTCCGCCGCTCGACGAAGAGGAAGCCAAGCAGGCCGACCCCGGCCAGGAGCAG CGCCGGCCAGGCCGTGGGAGACAACCAGCCGCCCTCTCCCGCGGCGATCAGGGCGTAGGTCAACGCCCCCAG CCAGACCACGCTGAGCAGCTGCCCCAGGGGATCGAAGGCGGCGTGCTCGGGGTGCGCGGTTTCCTCGATGCC CCACAGGCCCAGGGCGAGCGCCAGCAGGCCGAGCGGCAGGTTGATCAGGAAGATGCTCTGCCAGCCGGCGTG CTCCACCAGCAGGCCGCCGAGCAGCGGGCCGAGGATCAGCGACAGCGCGCTGAAGGAGGTCCAGCCGCCGAT CACCTGGGCGCGCTGGCCGGGATCGTGGAAAGCCTGGGTAAGGATCGACAGCGCGCCGGGTATCAACAGCGC CCCGGCGATGCCCTGGACCGCGCGTCCGAACAGCAGCAGCGGCAGCGAGGTGGCCAGCGCGCAGAGCAGCGA ACCGAAGCTGAACAGGCCGACCCCGAGCAGCCAGGTGAGCTTGCGACCGTAGCGGTCGCTCAGCGGTCCGGA AGACAGCATGAAGGCGCTCAGGCACAGCGCATAGGCGTCGACCACCCACTGCAGGCCGGCCAGGTCGGTATC CAGGGCGTACTGCAGCGTCGGCAGGGCGAGGTTGACGATGCTGATGTCGAGCGAGGCGATGAAGGTTCCCAG GTAGATGGCGGCGACCAGGGCGACACGACGCGAAGGGTTCATGGAGTACTCCGATGA