ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5664

TrivialName: PA14_47620

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_47620

PAO1 Ortholog Locus:

Sequence Length: 1572

Protein Length: 523

Start: 4242023

Stop: 4240452

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15] Identities = 108/378 (28%), Positives = 148/378 (39%), Gaps = 74/378 (19%)

Sequence:

GTGCGGTGCTGGTGGCGCTGGCTCTGTAGCCGGACGCGGCTGGCGCAGGACCGCCATGGCGCTGAGGAAGAG
CAGCGCGGCGGCGGCCAGCAGCACGGCGACGAAGGCCTGGTCGAAAGCCTGCCGGGCAAGCTCGACGAGCCG
CGACGCGACCTCCGGCGCCAGGCCCTCGGCGACCAACAGGGCGTCGTCGAGGCTGTCGCGGACCCGCGCCGG
CAGCTCGGCCGAGGGCAGCCTCAGCGACATCCCGTAGACGAAACTCATCAGGCTGCCGAGCAGGGTCACGCC
GATCACCCCGCCCAGTTCGTAGGACACGTCTTCGATGGCGGCCGCCATTCCGGAACTCTGTTCGTCCACGTT
GAGCATCACCGCGGTGGAGGCGGCGGTCATCGCGCCGCCGAAGCCGACGCCGAGCAGCACCAGGCTGGCCAG
TTGCGCTCCGGTGGCGGACTGGTAGGACAGGGCCAGGCCGAGCAATCCGGCGCTGCCGAGCAGCAGGGAGGC
GCACATCACCCGGTTCTCGCCCCAGCGCGGCACCAGCCAGCCGGCCAGCGGCCCGACCACCAGCGAGGCCAG
CGGGATCGGCAGGACGAACAGGCCGGCCTTCAGCGGCGTCAGGCCCTGCACCAGTTGCAGGTGCTGGCTGAA
CACCAGTTCCATGCCGACCAGCGCCATGGTCGCCACCAGGGCCACCGCGACGCCGCGGGCGAAGCGCCGGTT
GCGGAACAGCGCGAAGTCGATCATCGGTTCGCGGGCGCGGCGCTGGCGGCGGACGAACAGGTACAGGCAGAG
CATGCCGCCGAGCGCGGCCAGGACGGCCAGCCCGAAGTCCGGGGCGCGTGTGCTGAGTTCCTTGATCGCATA
CACCACCCCGACCAGGCCGAACATCACCTGCAGCGAGCCGAGGGCGTCCCATGGGCGCCGCGACTGGCCGCC
GCAGGCCGGGATGGCCGGCAGCGCCAGCAACAAAGCGACGACCACCACCGGGACGTTGATGAGGAACACCGA
GCCCCACCAGAAGAACTCCAGCAGCACGCCGCCGACCACCGGCCCCAGCGCCGCGCCGGCAGAGGCGACGGA
GGCCCAGATGCCGATGGCCAGGGCGCGTTCGCGTTCGTCCTGGAAGACATGGCGGACGATCGACAGGGTCGC
CGGCATCATCAGTGCCGCGCCCACCGCCAACCCGGCGCGGGCGGCGATCAGCGCCGCGGCGCTGGGGGCGAA
GGCGGCGCACAGCGAGGCCAGGCCGAACAGCGGCAGGCCGGCGAGGAACAGCCGCTTGTGGCCAAGGCGGTC
GCTGAGCAAGCCGGCGCCGGGCAGCAGGCCGGCGACCACCAGCGGATAGGCGTTGACGATCCAGAGCTTCTC
CGCGGCCGTCGCACCGAGGTCGTGGGTCAGGCGCGGCAGGGCCGTGTAGAGCACGGTCATGTCGATGATGAT
GAGGAACAGGGCGCTGGAGACGATGGCCAGGACCAGCCAGCGGTTCTGCCGGAACATGGGATAACCTCTGTG
GCGAACGGTTCTTCGCTCGCCGTGGATAACGGGAATTGCGCGCCACGGGCGGACGCGTGA

Translation:

MRCWWRWLCSRTRLAQDRHGAEEEQRGGGQQHGDEGLVESLPGKLDEPRRDLRRQALGDQQGVVEAVADPRR
QLGRGQPQRHPVDETHQAAEQGHADHPAQFVGHVFDGGRHSGTLFVHVEHHRGGGGGHRAAEADAEQHQAGQ
LRSGGGLVGQGQAEQSGAAEQQGGAHHPVLAPARHQPAGQRPDHQRGQRDRQDEQAGLQRRQALHQLQVLAE
HQFHADQRHGRHQGHRDAAGEAPVAEQREVDHRFAGAALAADEQVQAEHAAERGQDGQPEVRGACAEFLDRI
HHPDQAEHHLQRAEGVPWAPRLAAAGRDGRQRQQQSDDHHRDVDEEHRAPPEELQQHAADHRPQRRAGRGDG
GPDADGQGAFAFVLEDMADDRQGRRHHQCRAHRQPGAGGDQRRGAGGEGGAQRGQAEQRQAGEEQPLVAKAV
AEQAGAGQQAGDHQRIGVDDPELLRGRRTEVVGQARQGRVEHGHVDDDEEQGAGDDGQDQPAVLPEHGITSV
ANGSSLAVDNGNCAPRADA*

AnnotationID:5666 GeneID:5664

AnnotatorUID: diggins

Modification Date/Time: 2005-01-28 13:01:04

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15530

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28459

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37479

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5664_cdd.html

URL:

GC ORFID: `48666`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `711886`	Stop: `713457`
Length: `1572`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCGGTGCTGGTGGCGCTGGCTCTGTAGCCGGACGCGGCTGGCGCAGGACCGCCATGGCGCTGAGGAAGAG CAGCGCGGCGGCGGCCAGCAGCACGGCGACGAAGGCCTGGTCGAAAGCCTGCCGGGCAAGCTCGACGAGCCG CGACGCGACCTCCGGCGCCAGGCCCTCGGCGACCAACAGGGCGTCGTCGAGGCTGTCGCGGACCCGCGCCGG CAGCTCGGCCGAGGGCAGCCTCAGCGACATCCCGTAGACGAAACTCATCAGGCTGCCGAGCAGGGTCACGCC GATCACCCCGCCCAGTTCGTAGGACACGTCTTCGATGGCGGCCGCCATTCCGGAACTCTGTTCGTCCACGTT GAGCATCACCGCGGTGGAGGCGGCGGTCATCGCGCCGCCGAAGCCGACGCCGAGCAGCACCAGGCTGGCCAG TTGCGCTCCGGTGGCGGACTGGTAGGACAGGGCCAGGCCGAGCAATCCGGCGCTGCCGAGCAGCAGGGAGGC GCACATCACCCGGTTCTCGCCCCAGCGCGGCACCAGCCAGCCGGCCAGCGGCCCGACCACCAGCGAGGCCAG CGGGATCGGCAGGACGAACAGGCCGGCCTTCAGCGGCGTCAGGCCCTGCACCAGTTGCAGGTGCTGGCTGAA CACCAGTTCCATGCCGACCAGCGCCATGGTCGCCACCAGGGCCACCGCGACGCCGCGGGCGAAGCGCCGGTT GCGGAACAGCGCGAAGTCGATCATCGGTTCGCGGGCGCGGCGCTGGCGGCGGACGAACAGGTACAGGCAGAG CATGCCGCCGAGCGCGGCCAGGACGGCCAGCCCGAAGTCCGGGGCGCGTGTGCTGAGTTCCTTGATCGCATA CACCACCCCGACCAGGCCGAACATCACCTGCAGCGAGCCGAGGGCGTCCCATGGGCGCCGCGACTGGCCGCC GCAGGCCGGGATGGCCGGCAGCGCCAGCAACAAAGCGACGACCACCACCGGGACGTTGATGAGGAACACCGA GCCCCACCAGAAGAACTCCAGCAGCACGCCGCCGACCACCGGCCCCAGCGCCGCGCCGGCAGAGGCGACGGA GGCCCAGATGCCGATGGCCAGGGCGCGTTCGCGTTCGTCCTGGAAGACATGGCGGACGATCGACAGGGTCGC CGGCATCATCAGTGCCGCGCCCACCGCCAACCCGGCGCGGGCGGCGATCAGCGCCGCGGCGCTGGGGGCGAA GGCGGCGCACAGCGAGGCCAGGCCGAACAGCGGCAGGCCGGCGAGGAACAGCCGCTTGTGGCCAAGGCGGTC GCTGAGCAAGCCGGCGCCGGGCAGCAGGCCGGCGACCACCAGCGGATAGGCGTTGACGATCCAGAGCTTCTC CGCGGCCGTCGCACCGAGGTCGTGGGTCAGGCGCGGCAGGGCCGTGTAGAGCACGGTCATGTCGATGATGAT GAGGAACAGGGCGCTGGAGACGATGGCCAGGACCAGCCAGCGGTTCTGCCGGAACATGGGATAACCTCTGTG GCGAACGGTTCTTCGCTCGCCGTGGATAACGGGAATTGCGCGCCACGGGCGGACGCGTGA