ViewGene

Locus Name:
GeneID:
Location:

GeneID:5662
TrivialName: PA14_47710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47710
PAO1 Ortholog Locus:
Sequence Length:1443
Protein Length:480
Start: 4246221
Stop: 4247663
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 103/335 (30%), Positives = 125/335 (37%), Gaps = 40/335 (11%)
Sequence:
ATGTTCTGCGGCTTGAACGGCACCACCGCGACGCCGCGCCGGGCCAGCCAGCGGCACAGCGCGGTCACCAGG
GTGCTCTTGCCGGCGTCCGAGGTGGTGCCCTGGACCATCAGGGTCCGTCCGCGATCACTCATGAGCAGGCTC
CTTGAAGCCGAGCAGCGCGGCATCGAGCCGGGCCCAGGCGGCCTCGTCGGCGGGCAGGCCGAGGCGCAGGCT
GGCCGGCTGCTCGAACTGGCGGGTGAGGATGCCGCGCCGTGCCAGGTAGTCGTGCAACGCCGCGCAGCGTGG
ATCGACCAGGCGCTGGAACAGCGCGCTGCCGCCCGCCGGCGGCCAGCCGTGGCGGCGCAGCAGTTCCTCCAG
GCGCTGGCTGGCGGCCAGCAGGCGCTCGCGCTGCTGGCGCTGTTGCTGGCGGTCGCGCAAGGCGCTCTGGGC
CACATGGCGCACCGGGCCATTGACCGTCCACGGACCGAGCTGCTCGGCCAGCGCCTGCAACAGCGGCCGTTC
GCCGAGGGCGAAGCCGAGCCGCGCGCCGGCCAGGCCGAAGAACTTGCCGAACGAGCGCAGCACGATCAATCC
GGGCCGGTTGCTGCAGGCCGCCAGGCTCGACTGCGGGGTGCAGTCCATGAACGCCTCGTCGACCAGCAGCCA
GCCGCCGCGACGTTGCAGGCGGGCATGCCAGGCCAGCAGCTCGGCGGGCTCGAAGACCCGCCCGGTGGGGTT
GTTCGGGTTGACCACCAGCAGCACGTCGAGGCTGTCGAGATAGGGCTCGACCTCGGCCTCGCCGATCTCCCG
CACCAGGTGCCCGGCCTGGCGCCAGGCGTGGGCGTGCTCGGCGTAGCACGGCGACAGGACGCCGACCCGCCC
GCCCCGCCGCAACCTTGGCAGGGCCTGGATCGCCGCCTGGCTGCCGGCCAGCGGCAATACCCGTTCGGCGCC
GTAGTAGAGGCAGGCGGCGGCTTCCAGGCCGTCGTCGCTCTCCGGCAGGCGGGTCCAGGCCTGCTCGGGGAT
CGCCGGCAGCGGAAACGGCCAGGGCGCGATGCCGGTGGACAGGTCCAGCCAGTCCGCCAGCGGAATGTCGTA
GCGGCGCGCCGCCTCGCGCAACCGCCCTCCGTGTTCAAGCATGCAGCCACCCCATGGCCCAGAGTCCGGCCA
GCACCAGCAGCCAGAGCAGCACGCCCTGGCGTACCAGCGCCAGGGCCCGATAGATGTCGCGGCCCTGCGGCT
GCGGGCCGCTGCCGAGGAGCGGCCGCTGGTGCAGCTCGCCGTGGTAGATCGCCGCGCCGCCCAGGGAAACCC
CCAGCGCACCGGCGCCGGCGGCCATCACCGGGCCGGCGTTGGGGCTGTCCCATTGCGGCGCCTGCTCGCGCC
AGCAGCGCAGGGCCTGGCGGGTGCCGCCGAGCAGCGCGTAGGTCAGCGCCACCAGCCGCGCCGGCAGGTAGT
TGA
Translation:
MFCGLNGTTATPRRASQRHSAVTRVLLPASEVVPWTIRVRPRSLMSRLLEAEQRGIEPGPGGLVGGQAEAQA
GRLLELAGEDAAPCQVVVQRRAAWIDQALEQRAAARRRPAVAAQQFLQALAGGQQALALLALLLAVAQGALG
HMAHRAIDRPRTELLGQRLQQRPFAEGEAEPRAGQAEELAERAQHDQSGPVAAGRQARLRGAVHERLVDQQP
AAATLQAGMPGQQLGGLEDPPGGVVRVDHQQHVEAVEIGLDLGLADLPHQVPGLAPGVGVLGVARRQDADPP
APPQPWQGLDRRLAAGQRQYPFGAVVEAGGGFQAVVALRQAGPGLLGDRRQRKRPGRDAGGQVQPVRQRNVV
AARRLAQPPSVFKHAATPWPRVRPAPAARAARPGVPAPGPDRCRGPAAAGRCRGAAAGAARRGRSPRRPGKP
PAHRRRRPSPGRRWGCPIAAPARASSAGPGGCRRAARRSAPPAAPAGS*
AnnotationID:5664GeneID:5662
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 17:05:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:11279
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28455
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48664How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 707688Stop: 706246
Length: 1443
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTTCTGCGGCTTGAACGGCACCACCGCGACGCCGCGCCGGGCCAGCCAGCGGCACAGCGCGGTCACCAGG
GTGCTCTTGCCGGCGTCCGAGGTGGTGCCCTGGACCATCAGGGTCCGTCCGCGATCACTCATGAGCAGGCTC
CTTGAAGCCGAGCAGCGCGGCATCGAGCCGGGCCCAGGCGGCCTCGTCGGCGGGCAGGCCGAGGCGCAGGCT
GGCCGGCTGCTCGAACTGGCGGGTGAGGATGCCGCGCCGTGCCAGGTAGTCGTGCAACGCCGCGCAGCGTGG
ATCGACCAGGCGCTGGAACAGCGCGCTGCCGCCCGCCGGCGGCCAGCCGTGGCGGCGCAGCAGTTCCTCCAG
GCGCTGGCTGGCGGCCAGCAGGCGCTCGCGCTGCTGGCGCTGTTGCTGGCGGTCGCGCAAGGCGCTCTGGGC
CACATGGCGCACCGGGCCATTGACCGTCCACGGACCGAGCTGCTCGGCCAGCGCCTGCAACAGCGGCCGTTC
GCCGAGGGCGAAGCCGAGCCGCGCGCCGGCCAGGCCGAAGAACTTGCCGAACGAGCGCAGCACGATCAATCC
GGGCCGGTTGCTGCAGGCCGCCAGGCTCGACTGCGGGGTGCAGTCCATGAACGCCTCGTCGACCAGCAGCCA
GCCGCCGCGACGTTGCAGGCGGGCATGCCAGGCCAGCAGCTCGGCGGGCTCGAAGACCCGCCCGGTGGGGTT
GTTCGGGTTGACCACCAGCAGCACGTCGAGGCTGTCGAGATAGGGCTCGACCTCGGCCTCGCCGATCTCCCG
CACCAGGTGCCCGGCCTGGCGCCAGGCGTGGGCGTGCTCGGCGTAGCACGGCGACAGGACGCCGACCCGCCC
GCCCCGCCGCAACCTTGGCAGGGCCTGGATCGCCGCCTGGCTGCCGGCCAGCGGCAATACCCGTTCGGCGCC
GTAGTAGAGGCAGGCGGCGGCTTCCAGGCCGTCGTCGCTCTCCGGCAGGCGGGTCCAGGCCTGCTCGGGGAT
CGCCGGCAGCGGAAACGGCCAGGGCGCGATGCCGGTGGACAGGTCCAGCCAGTCCGCCAGCGGAATGTCGTA
GCGGCGCGCCGCCTCGCGCAACCGCCCTCCGTGTTCAAGCATGCAGCCACCCCATGGCCCAGAGTCCGGCCA
GCACCAGCAGCCAGAGCAGCACGCCCTGGCGTACCAGCGCCAGGGCCCGATAGATGTCGCGGCCCTGCGGCT
GCGGGCCGCTGCCGAGGAGCGGCCGCTGGTGCAGCTCGCCGTGGTAGATCGCCGCGCCGCCCAGGGAAACCC
CCAGCGCACCGGCGCCGGCGGCCATCACCGGGCCGGCGTTGGGGCTGTCCCATTGCGGCGCCTGCTCGCGCC
AGCAGCGCAGGGCCTGGCGGGTGCCGCCGAGCAGCGCGTAGGTCAGCGCCACCAGCCGCGCCGGCAGGTAGT
TGA