ViewGene
Locus Name:
GeneID:
Location:

GeneID:5658
TrivialName: PA14_47830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47830
PAO1 Ortholog Locus:
Sequence Length:966
Protein Length:321
Start: 4257091
Stop: 4256126
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK62518.1| (AY034092) putative minor silk ampullate protein [Micrococcus sp. 28]
Identities = 80/262 (30%), Positives = 100/262 (38%), Gaps = 40/262 (15%)
Sequence:
GTGGGCGCGGCCGCGGATGGTCGGCACGATACGCCCGCCGGGCTGGCCGTCGAGCCATTCGTAACGCCCCTC
GAACTGGCTGCCGATCACGCTCGCCTGGCGCCAGGGCTGGCCGGGCAGCAGCTTGCCGTCGGCGGCCAGGCA
GGCCAGCTTGGCACTGGTGCCGGTGCCGCAGGGCGAGCGGTCGTAGGCCTTGCCGGGGCAGAGCACGAAGTT
GCGGCTGTCGGCGTGGGGGTCGTCGGCGAACAGTTCGATGTGATCGATGGCGCCGCCGTCCTCGCCGCGGAT
GTCCTGGTCGTCCAGCGCCTGCTGGACGGCGACGGTGTAGGCGGTGAGGGCGTCGAGGTTGTCGCCGGCGAG
GCGCTGGCCGTGTCCGGCGACCAGGAAGAACCAGTTGCCGCCCCAGGCGATGTCGCCGCTGACCCGGCCGAT
GCCGGGCACTTCGACGCTGACCTGGCGACGGTAGCGGTAGGCCGGCACGTTGCGCACGCTGACCGAGCCGTC
CTCGTGGAGGGTCGCCTCGACCTCGCCGACCGGCGTCTCGATGCGGTGCACGCCGGGACCGATCCGCCCGAG
GTGTGCCAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGCCGAGGTAGCCACTGTTGTTGAAGAA
GATCACTCCGGCACAGGCTTCGGGATCGACCGGTGCGCAGAGCAGGGCGCCGACCAGTACGTCGCTGCCGCG
CGGTTCGAGGATGCAGGCGGCGCGCCAGGCGTCGTGGCGCTCGCCGAGCAGGCGCCGGCGCTCAGCCATGTC
GCCGTGGCCGAGATCGGGAAAGCCGCCGATGACCAGGCGGGTGGGCTCGCCGCCGGTATGCGAATCGATGAT
GCGGATGCGTTGCATGGTGGCCCTCGCCTGTGCCGGGGTATGCGCCACAGGGTGGCGTTTCGGCGGGGCGGG
GCGCTTGAGGGTTTTCGCTCAGGCGAGTGA
Translation:
MGAAADGRHDTPAGLAVEPFVTPLELAADHARLAPGLAGQQLAVGGQAGQLGTGAGAAGRAVVGLAGAEHEV
AAVGVGVVGEQFDVIDGAAVLAADVLVVQRLLDGDGVGGEGVEVVAGEALAVSGDQEEPVAAPGDVAADPAD
AGHFDADLATVAVGRHVAHADRAVLVEGRLDLADRRLDAVHAGTDPPEVCQRGDQADGAVAAHAEVATVVEE
DHSGTGFGIDRCAEQGADQYVAAARFEDAGGAPGVVALAEQAPALSHVAVAEIGKAADDQAGGLAAGMRIDD
ADALHGGPRLCRGMRHRVAFRRGGALEGFRSGE*
AnnotationID:5660GeneID:5658
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 14:02:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits found.






   
Genomic Context:






   
Comment:


















    ReferenceID:15526




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28447




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48660How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 696818Stop: 697783

          
Length: 966


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGGCGCGGCCGCGGATGGTCGGCACGATACGCCCGCCGGGCTGGCCGTCGAGCCATTCGTAACGCCCCTC 
GAACTGGCTGCCGATCACGCTCGCCTGGCGCCAGGGCTGGCCGGGCAGCAGCTTGCCGTCGGCGGCCAGGCA 
GGCCAGCTTGGCACTGGTGCCGGTGCCGCAGGGCGAGCGGTCGTAGGCCTTGCCGGGGCAGAGCACGAAGTT 
GCGGCTGTCGGCGTGGGGGTCGTCGGCGAACAGTTCGATGTGATCGATGGCGCCGCCGTCCTCGCCGCGGAT 
GTCCTGGTCGTCCAGCGCCTGCTGGACGGCGACGGTGTAGGCGGTGAGGGCGTCGAGGTTGTCGCCGGCGAG 
GCGCTGGCCGTGTCCGGCGACCAGGAAGAACCAGTTGCCGCCCCAGGCGATGTCGCCGCTGACCCGGCCGAT 
GCCGGGCACTTCGACGCTGACCTGGCGACGGTAGCGGTAGGCCGGCACGTTGCGCACGCTGACCGAGCCGTC 
CTCGTGGAGGGTCGCCTCGACCTCGCCGACCGGCGTCTCGATGCGGTGCACGCCGGGACCGATCCGCCCGAG 
GTGTGCCAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGCCGAGGTAGCCACTGTTGTTGAAGAA 
GATCACTCCGGCACAGGCTTCGGGATCGACCGGTGCGCAGAGCAGGGCGCCGACCAGTACGTCGCTGCCGCG 
CGGTTCGAGGATGCAGGCGGCGCGCCAGGCGTCGTGGCGCTCGCCGAGCAGGCGCCGGCGCTCAGCCATGTC 
GCCGTGGCCGAGATCGGGAAAGCCGCCGATGACCAGGCGGGTGGGCTCGCCGCCGGTATGCGAATCGATGAT 
GCGGATGCGTTGCATGGTGGCCCTCGCCTGTGCCGGGGTATGCGCCACAGGGTGGCGTTTCGGCGGGGCGGG 
GCGCTTGAGGGTTTTCGCTCAGGCGAGTGA