ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5654

TrivialName: PA14_48070

AnnotatorUID: diggins

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_48070

PAO1 Ortholog Locus:

Sequence Length: 2874

Protein Length: 957

Start: 4282077

Stop: 4279204

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAC38258.1| (AF004848) zinc-protease transporter [Pseudomonas fluorescens] Identities = 65/89 (73%), Positives = 66/89 (74%), Gaps = 8/89 (8%)

Sequence:

GTGTGGAATGACCCGCACGGTGAAACGCGACGAGAACGCCTATGCGCGACTGGGTTGGCTGCTGGTCCTGTT
CGGCTTCGGCGGCGCGCTGCTCTGGGCCGCCTTCGCGCCGCTCGACCAGGGCGTGGCGGTGCCGGCCACGGT
GATCATCTCCGGCCAGCGCAAGTCGGTGCAGCATCCGCTGGGCGGGGTGGTCAAGCACATCCTGGTGCGCGA
CGGCCAGCATGTGGAGGCGGGCGAGCCGCTGATCCGCATGGAACCGACCCAGGCCCGGGCCAACGTCGATTC
GCTGCTCAACCGGTACGCCAACGCGCGGCTCAACCAGGCGCGCCTGCAGGCCGAATACGACGGCCGGCGGAC
CCTGGAGATGCCCGCGGGGCTGGCCGAGCAGGCCCCGCTGCCGACCCTCGGCGAGCGCCTGGAGTTGCAGCG
GCAGTTGCTGCACAGCCGCCAGACCGCGCTGGCCAACGAACTCTCCGCATTGCGGGCGAACATCGAGGGGCT
GCGCGCCCAGCTCGAAGGGTTGCGCCAGACCGAGGGCAACCAGCGCCTGCAACAACGCCTGTTGAACAGCCA
GTTGAGCGGTGCGCGCGACCTCGCCGAGGAAGGCTACATGCCGCGCAACCAGTTGCTCGAACAGGAGCGCCA
ACTGGCCGAGGTGAACGCCCGGCTATCGGAGAGCAGCGGTCGCTTCGGGCAGATCCGCCAGAGCATCGCCGA
GGCGCAGATGCGCATCGCCCAACGCGAGGAGGAGTACCGCAAGGAAGTCAACGGGCAACTGGCGGAAACCCA
GGTCAATGCGCGGACGCTCTGGGAGGAGCTGTCCTCGGCGCGCTACGAACTGCGGCACGCCGAGATCCGCGC
ACCGGTCAGCGGCTACGTGGCCGGCTTGAAGGTGTTCACCGATGGCGGGGTGATCGGCCCCGGCGAATTGCT
GATGTACATCGTGCCCAACAGCGACAGCCTGGAAGTGGAGGGCCAGCTCGCGGTGAACCTGGTCGACCGGAT
CCACAGCGGGCTGCCGGTGGAGATGCTGTTCACCGCCTTCAACCAGAGCAAGACCCCGCGGGTCACCGGCGA
GGTGACCATGGTCAGCGCCGACCGCCTGCTCGACGAGCAGAACAAGCAGCCCTACTACGCGCTGCGCGCCCA
GGTCGACGCGGCCGGGATGGGCAAGCTGAAGGGCCTGCAGATCCGCCCGGGAATGGCGGTGCAGGTGTTCGT
CCGCACCGGCGAGCGCTCGCTGCTCAACTACCTGTTCAAGCCCCTGTTCGACCGCGCCCACGTGGCGCTGGC
GGAGAACTGACCGATGACCATGCGCCGCCTGATGACCTGGCTGTTCGGCGCctTcCTGTTGCTGCTGCGCGA
GGATGCCTTCGCCCTCGGCCTGCTGGACGGCTATCACCTGGCCCTGGAGAACGACCCGCAGTTCCAGGCCGC
GATCCAGGAGCACGAGgCCGGCAGGCAATACCGTGCGCTCGGCCGCGCGGCGCTGCTGCCGCGCCTGGTGTA
CAGCTACAACCGTGGGCGCAGTTGGTCCGATGTGACCCAGACCACCACCCGCGGCGATTTCAAGGAAGACCG
CGACTACGACAGCTACGTCTCCACCCTCAGCCTGCAACAGCCGTTGTTCGACTACGAGGCCTTCAGCCGCTA
CCGCAAGGGCGTGGCCcAGGCGCTGCTGTCCGACGAGCGCTTCCGCAGCCAGAGCCAGGAACTGCTGGTCCG
GGTCCTGGAAGCCTATACCGGCGCGCTGCTGGCCCAGGACCAGATCGAACTGGCGCGGGCGCAGAAACGCTC
CTACCGCGAGCAGTTCCAGCTCAACCAGCGCCAGTTCGAGCGCGGCAACGGCACCCGCACCGACACCCTGGA
GACCCAGGCCCGCTTCAACCTGGCCCAGGCCCAGGAAATCGAGGCGCGGGACAGCCAGGATGCCGCCCTGCG
CGAGCTGGAGCGACTGGTCGGGGCGCCGCTGGAGATCGCCGACCTGGCGCCGCTCGGCGAACGCTTCCAGGT
GCGCCCGCTGAGCCCCGCCAGCTACACCGCCTGGCGCGACCTGGCGCTGGCCGAGAATCCCGAGCTGGCCTC
GCTGCGCCACGCGGTGGACGTGGCCCGCTACGAGGTCGAGCAGAACCGCGCCGACTTCCTGCCGCGCCTGGG
CCTGTACGCCAGCACCGGCAAGTCCAAGTCCGGTTCGGAGAACACCTACAACCAGCGCTACGAGACCGACAG
CGTCGGCATCCAGTTGAGCGTTCCGCTGTTCTCCGGCGGCGAGACCCTGGCGGCGACGCGCCAGGCCACGCA
TCGCATGGAGAAGAGCCATTACGACCTGGACGACAAGGTCCGCGAGACCCTCAACCAGGTGCGCAAGATGTA
CAACCAGAGCAGCAGCAGCGCGGCGAAGATCCGCGCCTACGAGATGACCGTGGATTCGGCGCGGACGTTGGT
GATGGCCACGCGCAAGAGCATCGCCGCCGGGGTGCGGGTCAACCTCGACCTGCTGAACGCCGAGCAGGCGCT
GTACAGCGCGATGAACGAGCTGTCCAAGGCCAAGTACGACTACCTCACGGCCTGGGCACGCCTGCGTTTCTA
CGCCGGGGTGCTGGACGAGGCCGACCTGGAACTGGTGGCGGCGAACTTCGTTTCCGGCGAGACGCCGGCGCG
CCGCCGCGACTGCGCGACGACGGATTGCCCGGCGCCGCTGCACACCCTGTCGAAGACCGATACGGAGGAAAA
CCGGAGCGCGCTCAATTGAGACCGCGAAGGACGTGCAGGCAATTGTTCGCCTGGCGTGAAGTCGATGTCCCG
GGCGGGTCGACAGAGGTCGAACAATACGCATGGAATTGTTTTTTCAATAAGGCGCTATTTATATGA

Translation:

MWNDPHGETRRERLCATGLAAGPVRLRRRAALGRLRAARPGRGGAGHGDHLRPAQVGAASAGRGGQAHPGAR
RPACGGGRAADPHGTDPGPGQRRFAAQPVRQRAAQPGAPAGRIRRPADPGDARGAGRAGPAADPRRAPGVAA
AVAAQPPDRAGQRTLRIAGEHRGAARPARRVAPDRGQPAPATTPVEQPVERCARPRRGRLHAAQPVARTGAP
TGRGERPAIGEQRSLRADPPEHRRGADAHRPTRGGVPQGSQRATGGNPGQCADALGGAVLGALRTAARRDPR
TGQRLRGRLEGVHRWRGDRPRRIADVHRAQQRQPGSGGPARGEPGRPDPQRAAGGDAVHRLQPEQDPAGHRR
GDHGQRRPPARRAEQAALLRAARPGRRGRDGQAEGPADPPGNGGAGVRPHRRALAAQLPVQAPVRPRPRGAG
GELTDDHAPPDDLAVRRLPVAAARGCLRPRPAGRLSPGPGERPAVPGRDPGARGRQAIPCARPRGAAAAPGV
QLQPWAQLVRCDPDHHPRRFQGRPRLRQLRLHPQPATAVVRLRGLQPLPQGRGPGAAVRRALPQPEPGTAGP
GPGSLYRRAAGPGPDRTGAGAETLLPRAVPAQPAPVRARQRHPHRHPGDPGPLQPGPGPGNRGAGQPGCRPA
RAGATGRGAAGDRRPGAARRTLPGAPAEPRQLHRLARPGAGRESRAGLAAPRGGRGPLRGRAEPRRLPAAPG
PVRQHRQVQVRFGEHLQPALRDRQRRHPVERSAVLRRRDPGGDAPGHASHGEEPLRPGRQGPRDPQPGAQDV
QPEQQQRGEDPRLRDDRGFGADVGDGHAQEHRRRGAGQPRPAERRAGAVQRDERAVQGQVRLPHGLGTPAFL
RRGAGRGRPGTGGGELRFRRDAGAPPRLRDDGLPGAAAHPVEDRYGGKPERAQLRPRRTCRQLFAWREVDVP
GGSTEVEQYAWNCFFNKALFI*

AnnotationID:5656 GeneID:5654

AnnotatorUID: danlee

Modification Date/Time: 2006-02-03 13:01:55

Gene Name:

Confidence Code: 3

GeneProduct: putative zinc-protease transporter

Cell Localization: (6) Outer membrane protein

Synonyms:

Cell Localization Confidence Code: 3

MolecularFunction:

Functional Category: (19) Protein secretion/export apparatus

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): secreted factors (toxins, enzymes,alginate)

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAC38258.1| (AF004848) zinc-protease transporter [Pseudomonas fluorescens]
          Length = 471

 Score =  123 bits (309), Expect = 5e-27
 Identities = 65/89 (73%), Positives = 66/89 (74%), Gaps = 8/89 (8%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:15520

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28440

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:38040

Author/Investigator(s): Duong F, Lazdunski A, Cami B, Murgier M.

Title: Sequence of a cluster of genes controlling synthesis and secretion of alkaline protease in Pseudomonas aeruginosa: relationships to other secretory pathways.

PubMed: 1427098

MedLine:

Source:

Gene. 1992 Nov 2;121(1):47-54.

Reference Type: Journal

Data:

URL:	`http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1427098`

Homologs By Global Alignment

Gene ID:5654

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

197514 gb|AAC38258.1| (AF004848) zinc-protease transporter [Pseudomonas fluorescens] 1080 16.29 18.24 732 459.0

GC ORFID: `48656`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `671832`	Stop: `674705`
Length: `2874`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTGGAATGACCCGCACGGTGAAACGCGACGAGAACGCCTATGCGCGACTGGGTTGGCTGCTGGTCCTGTT CGGCTTCGGCGGCGCGCTGCTCTGGGCCGCCTTCGCGCCGCTCGACCAGGGCGTGGCGGTGCCGGCCACGGT GATCATCTCCGGCCAGCGCAAGTCGGTGCAGCATCCGCTGGGCGGGGTGGTCAAGCACATCCTGGTGCGCGA CGGCCAGCATGTGGAGGCGGGCGAGCCGCTGATCCGCATGGAACCGACCCAGGCCCGGGCCAACGTCGATTC GCTGCTCAACCGGTACGCCAACGCGCGGCTCAACCAGGCGCGCCTGCAGGCCGAATACGACGGCCGGCGGAC CCTGGAGATGCCCGCGGGGCTGGCCGAGCAGGCCCCGCTGCCGACCCTCGGCGAGCGCCTGGAGTTGCAGCG GCAGTTGCTGCACAGCCGCCAGACCGCGCTGGCCAACGAACTCTCCGCATTGCGGGCGAACATCGAGGGGCT GCGCGCCCAGCTCGAAGGGTTGCGCCAGACCGAGGGCAACCAGCGCCTGCAACAACGCCTGTTGAACAGCCA GTTGAGCGGTGCGCGCGACCTCGCCGAGGAAGGCTACATGCCGCGCAACCAGTTGCTCGAACAGGAGCGCCA ACTGGCCGAGGTGAACGCCCGGCTATCGGAGAGCAGCGGTCGCTTCGGGCAGATCCGCCAGAGCATCGCCGA GGCGCAGATGCGCATCGCCCAACGCGAGGAGGAGTACCGCAAGGAAGTCAACGGGCAACTGGCGGAAACCCA GGTCAATGCGCGGACGCTCTGGGAGGAGCTGTCCTCGGCGCGCTACGAACTGCGGCACGCCGAGATCCGCGC ACCGGTCAGCGGCTACGTGGCCGGCTTGAAGGTGTTCACCGATGGCGGGGTGATCGGCCCCGGCGAATTGCT GATGTACATCGTGCCCAACAGCGACAGCCTGGAAGTGGAGGGCCAGCTCGCGGTGAACCTGGTCGACCGGAT CCACAGCGGGCTGCCGGTGGAGATGCTGTTCACCGCCTTCAACCAGAGCAAGACCCCGCGGGTCACCGGCGA GGTGACCATGGTCAGCGCCGACCGCCTGCTCGACGAGCAGAACAAGCAGCCCTACTACGCGCTGCGCGCCCA GGTCGACGCGGCCGGGATGGGCAAGCTGAAGGGCCTGCAGATCCGCCCGGGAATGGCGGTGCAGGTGTTCGT CCGCACCGGCGAGCGCTCGCTGCTCAACTACCTGTTCAAGCCCCTGTTCGACCGCGCCCACGTGGCGCTGGC GGAGAACTGACCGATGACCATGCGCCGCCTGATGACCTGGCTGTTCGGCGCctTcCTGTTGCTGCTGCGCGA GGATGCCTTCGCCCTCGGCCTGCTGGACGGCTATCACCTGGCCCTGGAGAACGACCCGCAGTTCCAGGCCGC GATCCAGGAGCACGAGgCCGGCAGGCAATACCGTGCGCTCGGCCGCGCGGCGCTGCTGCCGCGCCTGGTGTA CAGCTACAACCGTGGGCGCAGTTGGTCCGATGTGACCCAGACCACCACCCGCGGCGATTTCAAGGAAGACCG CGACTACGACAGCTACGTCTCCACCCTCAGCCTGCAACAGCCGTTGTTCGACTACGAGGCCTTCAGCCGCTA CCGCAAGGGCGTGGCCcAGGCGCTGCTGTCCGACGAGCGCTTCCGCAGCCAGAGCCAGGAACTGCTGGTCCG GGTCCTGGAAGCCTATACCGGCGCGCTGCTGGCCCAGGACCAGATCGAACTGGCGCGGGCGCAGAAACGCTC CTACCGCGAGCAGTTCCAGCTCAACCAGCGCCAGTTCGAGCGCGGCAACGGCACCCGCACCGACACCCTGGA GACCCAGGCCCGCTTCAACCTGGCCCAGGCCCAGGAAATCGAGGCGCGGGACAGCCAGGATGCCGCCCTGCG CGAGCTGGAGCGACTGGTCGGGGCGCCGCTGGAGATCGCCGACCTGGCGCCGCTCGGCGAACGCTTCCAGGT GCGCCCGCTGAGCCCCGCCAGCTACACCGCCTGGCGCGACCTGGCGCTGGCCGAGAATCCCGAGCTGGCCTC GCTGCGCCACGCGGTGGACGTGGCCCGCTACGAGGTCGAGCAGAACCGCGCCGACTTCCTGCCGCGCCTGGG CCTGTACGCCAGCACCGGCAAGTCCAAGTCCGGTTCGGAGAACACCTACAACCAGCGCTACGAGACCGACAG CGTCGGCATCCAGTTGAGCGTTCCGCTGTTCTCCGGCGGCGAGACCCTGGCGGCGACGCGCCAGGCCACGCA TCGCATGGAGAAGAGCCATTACGACCTGGACGACAAGGTCCGCGAGACCCTCAACCAGGTGCGCAAGATGTA CAACCAGAGCAGCAGCAGCGCGGCGAAGATCCGCGCCTACGAGATGACCGTGGATTCGGCGCGGACGTTGGT GATGGCCACGCGCAAGAGCATCGCCGCCGGGGTGCGGGTCAACCTCGACCTGCTGAACGCCGAGCAGGCGCT GTACAGCGCGATGAACGAGCTGTCCAAGGCCAAGTACGACTACCTCACGGCCTGGGCACGCCTGCGTTTCTA CGCCGGGGTGCTGGACGAGGCCGACCTGGAACTGGTGGCGGCGAACTTCGTTTCCGGCGAGACGCCGGCGCG CCGCCGCGACTGCGCGACGACGGATTGCCCGGCGCCGCTGCACACCCTGTCGAAGACCGATACGGAGGAAAA CCGGAGCGCGCTCAATTGAGACCGCGAAGGACGTGCAGGCAATTGTTCGCCTGGCGTGAAGTCGATGTCCCG GGCGGGTCGACAGAGGTCGAACAATACGCATGGAATTGTTTTTTCAATAAGGCGCTATTTATATGA