ViewGene
Locus Name:
GeneID:
Location:

GeneID:5652
TrivialName: PA14_48110
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48110
PAO1 Ortholog Locus:
Sequence Length:516
Protein Length:171
Start: 4282582
Stop: 4282067
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Inactivated 2/03/06. PA14_48120 (GeneID 5650) and PA14_48110 (GeneID 5652) replaced by PA14_48115 (GeneID 7385). Homology: gb|AAG04635.1|AE004554_3 (AE004554) alkaline protease secretion protein AprD [Pseudomonas aeruginosa PAO1]
Identities = 169/171 (98%), Positives = 170/171 (99%)
Sequence:
gtggcggaAAACATTGCCCGcttcGGCGAGGTGCAGGCCGACAAGGTGGTGGAGGCGGCGCGCCTGGCCGGG
GTCCATGAACTGGTCCTGCGCCTGCCGCAGGGCTACGACACCGTGCTCGGCGTCGGCGGCGCCGGGCTTTCC
GGCGGCCAGCGCCAGCGCATCGCCCTGGCCCGGGCGCTGTACGGTGCGCCGACCCTGGTGGTGCTCGACGAA
CCCAACTCGAACCTCGACGACAGCGGCGAGCAGGCGCTGCAGGCGGCGATCCAGGCGCTCAAGGCGCGTGGC
TGCACGGTGCTGCTGATCACCCACCGGGCCGGCGTGCTGGGTTGCGCCGACCGCCTGCTGGCGCTGAACGCC
GGCCAGTTGCACCTGTACGGCGAGCGTGACCAGGTGCTCGCCGCCTTGAACAACCAGCGCGCCGCGTCGGCG
TCGCAGCAGCGCGCGGACTACCGGGTGGCCGGCTACGGCGCGCCGCAGGTGGTGGCCGCGCCGCGCCAGGGA
GGTGTGGAATGA
Translation:
MAENIARFGEVQADKVVEAARLAGVHELVLRLPQGYDTVLGVGGAGLSGGQRQRIALARALYGAPTLVVLDE
PNSNLDDSGEQALQAAIQALKARGCTVLLITHRAGVLGCADRLLALNAGQLHLYGERDQVLAALNNQRAASA
SQQRADYRVAGYGAPQVVAAPRQGGVE*
AnnotationID:5654GeneID:5652
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 13:01:30
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD89202.1| (AJ556796) putative ABC transporter [Pseudomonas fluorescens]
          Length = 589

 Score =  178 bits (452), Expect = 1e-44
 Identities = 98/170 (57%), Positives = 119/170 (70%), Gaps = 16/170 (9%)

>dbj|BAA12015.1| (D83582) metalloprotease transporter [Serratia marcescens]
          Length = 582

 Score =  178 bits (452), Expect = 1e-44
 Identities = 87/136 (63%), Positives = 109/136 (80%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15518




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28436




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37546




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5652_cdd.html


    		




 
URL:

















    ReferenceID:38042




  
Author/Investigator(s):
        Duong F, Lazdunski A, Cami B, Murgier M.





  
Title:
        Sequence of a cluster of genes controlling synthesis and secretion of alkaline protease in Pseudomonas aeruginosa: relationships to other secretory pathways.




  
PubMed:
        1427098


MedLine:
        




    
Source:
Gene. 1992 Nov 2;121(1):47-54.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1427098









           
Homologs By Global Alignment 

           

       



     
Gene ID:5652
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197424
                           gb|AAK77320.1|
                           (AF028810) putative ABC transporter PrsD [Rhizobium leguminosarum bv. viciae]
                           211
                           40.28
                           54.97
                           51
                           395.0
     

     
     
7906
                           PA1246_tr
                           translation of PA1246
                           593
                           28.66
                           28.66
                           422
                           841.0
     

     
     
197391
                           gb|AAG04635.1|AE004554_3
                           (AE004554) alkaline protease secretion protein AprD [Pseudomonas aeruginosa PAO1]
                           593
                           28.66
                           28.66
                           422
                           841.0
     

     
     
197392
                           emb|CAA45855.1|
                           (X64558) aprD [Pseudomonas aeruginosa]
                           593
                           28.66
                           28.66
                           422
                           841.0
     

     
     
197439
                           gb|AAO08435.1|AE016813_187
                           (AE016813) ABC-type protease/lipase transport system, ATPase and permease component [Vibrio vulnificus CMCP6]
                           441
                           17.00
                           23.35
                           291
                           353.0
     

     






      

          
GC ORFID: 48654How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 671327Stop: 671842

          
Length: 516


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1246 translation of PA1246Homolog Bit Score 328.0

          
Other Homologs:  t_PA1246 translation of PA1246 (BLASTP 328), psyr_15may02_Scaffold17_revised_gene2827 related to: gi|9438189|gb|AAF87590.1|AF286062_3 (AF286062) AprD [Pseudomonas brassicacearum] (BLASTP 181), psyr_15may02_Scaffold3_revised_gene4284 related to: gi|15596443|ref|NP_249937.1| (NC_002516) alkaline protease secretion protein AprD [Pseudomonas aeruginosa] sp|Q03024|APRD_PSEAE Alkaline protease secretion ATP-binding protein aprD pir||S26696 aprD protein - Pseudomonas aeruginosa pir||F83489 alkaline-TRUNCATED- (BLASTP 180), t_PA3406 translation of PA3406 (BLASTP 177), psyr_15may02_Scaffold11_revised_gene1823 related to: gi|15838988|ref|NP_299676.1| (NC_002488) toxin secretion ABC transporter ATP-binding protein [Xylella fastidiosa 9a5c] pir||E82561 toxin secretion ABC transporter ATP-binding protein XF2397 [imported] - Xylella fastidiosa (strain 9a5c) gb|AA-TRUNCATED- (BLASTP 106), t_PA1113 translation of PA1113 (BLASTP 101)

          
GC ORF Sequence

           
gtggcggaAAACATTGCCCGcttcGGCGAGGTGCAGGCCGACAAGGTGGTGGAGGCGGCGCGCCTGGCCGGG 
GTCCATGAACTGGTCCTGCGCCTGCCGCAGGGCTACGACACCGTGCTCGGCGTCGGCGGCGCCGGGCTTTCC 
GGCGGCCAGCGCCAGCGCATCGCCCTGGCCCGGGCGCTGTACGGTGCGCCGACCCTGGTGGTGCTCGACGAA 
CCCAACTCGAACCTCGACGACAGCGGCGAGCAGGCGCTGCAGGCGGCGATCCAGGCGCTCAAGGCGCGTGGC 
TGCACGGTGCTGCTGATCACCCACCGGGCCGGCGTGCTGGGTTGCGCCGACCGCCTGCTGGCGCTGAACGCC 
GGCCAGTTGCACCTGTACGGCGAGCGTGACCAGGTGCTCGCCGCCTTGAACAACCAGCGCGCCGCGTCGGCG 
TCGCAGCAGCGCGCGGACTACCGGGTGGCCGGCTACGGCGCGCCGCAGGTGGTGGCCGCGCCGCGCCAGGGA 
GGTGTGGAATGA