ViewGene
Locus Name:
GeneID:
Location:

GeneID:5650
TrivialName: PA14_48120
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48120
PAO1 Ortholog Locus:
Sequence Length:1347
Protein Length:448
Start: 4283848
Stop: 4282503
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/03/06. PA14_48120 (GeneID 5650) and PA14_48110 (GeneID 5652) replaced by PA14_48115 (GeneID 7385). Homology: gb|AAG04635.1|AE004554_3 (AE004554) alkaline protease secretion protein AprD [Pseudomonas aeruginosa PAO1]
Identities = 420/421 (99%), Positives = 421/421 (100%)
Sequence:
ATGGCAAGGCTCGGTTCCAGCGTTACCAACGAAATCAAACAGGCCCTGGCGGCCAGCCGCGGCGCGTTGCGC
AGCGTGGCGGCGTTCTCTGGGGTGATCAACCTGCTGATGCTGGTGCCCTCGCTGTACATGCTGCAGGTGTAC
GACCGCGTGCTGTCCTCGGCCAACGAAGTCACCCTGTTGATGCTGACCCTGATGGCGCTCGGCGTGTTCGTC
TTCATGGGCGCGCTGGAGGCGCTGCGCAGCTTCGTCCTGGTGCGGGTCAGCGAACGCTTCGACGGCCAGTTG
CACGGGCGGATCTACGCCGCCGCCTTCGAACGCAACCTGCGCGCCGGCGGCCAGGAGGCCAGCCAGGCGCTG
CACGACCTGACCACCCTGCGCCAGTTCCTCACCGGCCAGGCGCTGTTCGCCTTCTTCGACGCACCCTGGTTC
CCGGTCTACCTGCTGGTGATCTTCCTCTTCGACCCCTGGCTCGGCCTGCTCTCGCTGGTCGGCGCGCTGGCC
CTGATGGCCCTCGCCTGGTTCAACGAACGCGCCACCCGTGCGCCGCTGGCCAAGGCCGGCGAGTTGTCGATC
AAGTCCGGCCAACTGGCCAGCAACAACCTGCGCAACGCCGAGGTGATCGAGGCGATGGGCATGCTCGGTAGC
ATGCGCGGGCGCTGGGAACGGCTGCACCAGGCGTTCCTCGACCAGCAGAGCCTGGCCAGCGAGCGCGCGGCG
CGGATCAACGCGCTGAGCAAGTACCTGCGCATCGCCCTGCAATCCCTGGTGCTCGGCCTCGGCGCCTGGCTG
GCGGTGGAGGGACGCATCACCCCGGGGATGATGATCGCCGGCTCGATCCTGATGGGCCGTGCGCTGGGGCCC
ATCGACCAACTGATCGGCGTGTGGAAGCAGTGGGGCGCGGCGCGCGATGCCTATCGCCGGCTGAGCGGCCTG
CTCGACGAATTCCCCGCCCGCGAGCGGCGCATGGAATTGCCCGAGCCGCGTGGCCACCTGCTGCTGGAATCG
CTGGACGCGGCGCCGCCCGGCAGCGAGGCGCGCACCCTGCGTGGCCTGACCCTGGCGATCCCGGCCGGCTCG
GTGGTCGGCGTGATCGGTCCGTCCGGCTCCGGCAAGTCGAGCCTGGCGCGGGTAGTGCTGGGCATCTGGCCG
ACCCTGCACGGCAGCGTGCGCCTGGACGGCGCCGAGATCCGCCAGTACGAGCGCGAGACCCTCGGCCCGCGC
ATCGGCTACCTGCCGCAGGACATCGAACTGTTCGCcgGGCAcggtggcggaAAACATTGCCCGcttcGGCGA
GGTGCAGGCCGACAAGGTGGTGGAGGCGGCGCGCCTGGCCGGGGTCCATGA
Translation:
MARLGSSVTNEIKQALAASRGALRSVAAFSGVINLLMLVPSLYMLQVYDRVLSSANEVTLLMLTLMALGVFV
FMGALEALRSFVLVRVSERFDGQLHGRIYAAAFERNLRAGGQEASQALHDLTTLRQFLTGQALFAFFDAPWF
PVYLLVIFLFDPWLGLLSLVGALALMALAWFNERATRAPLAKAGELSIKSGQLASNNLRNAEVIEAMGMLGS
MRGRWERLHQAFLDQQSLASERAARINALSKYLRIALQSLVLGLGAWLAVEGRITPGMMIAGSILMGRALGP
IDQLIGVWKQWGAARDAYRRLSGLLDEFPARERRMELPEPRGHLLLESLDAAPPGSEARTLRGLTLAIPAGS
VVGVIGPSGSGKSSLARVVLGIWPTLHGSVRLDGAEIRQYERETLGPRIGYLPQDIELFAGHGGGKHCPLRR
GAGRQGGGGGAPGRGP*
AnnotationID:5652GeneID:5650
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 12:12:34
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA88492.1| (AB023289) ABC protein [Pseudomonas fluorescens]
          Length = 580

 Score =  506 bits (1302), Expect = e-142
 Identities = 261/412 (63%), Positives = 313/412 (75%)

>gb|AAO39140.1| (AY230750) putative type I secretion protein [Photorhabdus
           luminescens]
          Length = 578

 Score =  475 bits (1222), Expect = e-133
 Identities = 237/413 (57%), Positives = 312/413 (75%), Gaps = 1/413 (0%)

>gb|AAF87590.1|AF286062_3 (AF286062) AprD [Pseudomonas brassicacearum]
          Length = 599

 Score =  464 bits (1194), Expect = e-130
 Identities = 236/421 (56%), Positives = 306/421 (72%)






 
Structural Features:






   
Genomic Context:






   
Comment:
Inactivated 2/03/06.  PA14_48120 (GeneID 5650) and PA14_48110 (GeneID 5652) 
replaced by PA14_48115 (GeneID 7385).


















    ReferenceID:11255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28432




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37545




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5650_cdd.html


    		




 
URL:

















    ReferenceID:38043




  
Author/Investigator(s):
        Duong F, Lazdunski A, Cami B, Murgier M.





  
Title:
        Sequence of a cluster of genes controlling synthesis and secretion of alkaline protease in Pseudomonas aeruginosa: relationships to other secretory pathways.




  
PubMed:
        1427098


MedLine:
        




    
Source:
Gene. 1992 Nov 2;121(1):47-54.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1427098









           
Homologs By Global Alignment 

           

       



     
Gene ID:5650
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7904
                           PA1246_tr
                           translation of PA1246
                           593
                           72.17
                           72.68
                           145
                           2087.0
     

     
     
197338
                           gb|AAG04635.1|AE004554_3
                           (AE004554) alkaline protease secretion protein AprD [Pseudomonas aeruginosa PAO1]
                           593
                           72.17
                           72.68
                           145
                           2087.0
     

     
     
197339
                           emb|CAA45855.1|
                           (X64558) aprD [Pseudomonas aeruginosa]
                           593
                           72.17
                           72.68
                           145
                           2087.0
     

     
     
197341
                           dbj|BAA88492.1|
                           (AB023289) ABC protein [Pseudomonas fluorescens]
                           584
                           46.74
                           55.82
                           140
                           1298.0
     

     
     
197344
                           gb|AAP76499.1|
                           (AY240957) AprD [uncultured bacterium]
                           542
                           45.94
                           58.67
                           96
                           1226.0
     

     






      

          
GC ORFID: 48652How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 670060Stop: 671406

          
Length: 1347


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1246 translation of PA1246Homolog Bit Score 812.0

          
Other Homologs:  t_PA1246 translation of PA1246 (BLASTP 812), t_PA3406 translation of PA3406 (BLASTP 506), psyr_15may02_Scaffold17_revised_gene2827 related to: gi|9438189|gb|AAF87590.1|AF286062_3 (AF286062) AprD [Pseudomonas brassicacearum] (BLASTP 467), psyr_15may02_Scaffold3_revised_gene4284 related to: gi|15596443|ref|NP_249937.1| (NC_002516) alkaline protease secretion protein AprD [Pseudomonas aeruginosa] sp|Q03024|APRD_PSEAE Alkaline protease secretion ATP-binding protein aprD pir||S26696 aprD protein - Pseudomonas aeruginosa pir||F83489 alkaline-TRUNCATED- (BLASTP 402)

          
GC ORF Sequence

           
ATGGCAAGGCTCGGTTCCAGCGTTACCAACGAAATCAAACAGGCCCTGGCGGCCAGCCGCGGCGCGTTGCGC 
AGCGTGGCGGCGTTCTCTGGGGTGATCAACCTGCTGATGCTGGTGCCCTCGCTGTACATGCTGCAGGTGTAC 
GACCGCGTGCTGTCCTCGGCCAACGAAGTCACCCTGTTGATGCTGACCCTGATGGCGCTCGGCGTGTTCGTC 
TTCATGGGCGCGCTGGAGGCGCTGCGCAGCTTCGTCCTGGTGCGGGTCAGCGAACGCTTCGACGGCCAGTTG 
CACGGGCGGATCTACGCCGCCGCCTTCGAACGCAACCTGCGCGCCGGCGGCCAGGAGGCCAGCCAGGCGCTG 
CACGACCTGACCACCCTGCGCCAGTTCCTCACCGGCCAGGCGCTGTTCGCCTTCTTCGACGCACCCTGGTTC 
CCGGTCTACCTGCTGGTGATCTTCCTCTTCGACCCCTGGCTCGGCCTGCTCTCGCTGGTCGGCGCGCTGGCC 
CTGATGGCCCTCGCCTGGTTCAACGAACGCGCCACCCGTGCGCCGCTGGCCAAGGCCGGCGAGTTGTCGATC 
AAGTCCGGCCAACTGGCCAGCAACAACCTGCGCAACGCCGAGGTGATCGAGGCGATGGGCATGCTCGGTAGC 
ATGCGCGGGCGCTGGGAACGGCTGCACCAGGCGTTCCTCGACCAGCAGAGCCTGGCCAGCGAGCGCGCGGCG 
CGGATCAACGCGCTGAGCAAGTACCTGCGCATCGCCCTGCAATCCCTGGTGCTCGGCCTCGGCGCCTGGCTG 
GCGGTGGAGGGACGCATCACCCCGGGGATGATGATCGCCGGCTCGATCCTGATGGGCCGTGCGCTGGGGCCC 
ATCGACCAACTGATCGGCGTGTGGAAGCAGTGGGGCGCGGCGCGCGATGCCTATCGCCGGCTGAGCGGCCTG 
CTCGACGAATTCCCCGCCCGCGAGCGGCGCATGGAATTGCCCGAGCCGCGTGGCCACCTGCTGCTGGAATCG 
CTGGACGCGGCGCCGCCCGGCAGCGAGGCGCGCACCCTGCGTGGCCTGACCCTGGCGATCCCGGCCGGCTCG 
GTGGTCGGCGTGATCGGTCCGTCCGGCTCCGGCAAGTCGAGCCTGGCGCGGGTAGTGCTGGGCATCTGGCCG 
ACCCTGCACGGCAGCGTGCGCCTGGACGGCGCCGAGATCCGCCAGTACGAGCGCGAGACCCTCGGCCCGCGC 
ATCGGCTACCTGCCGCAGGACATCGAACTGTTCGCcgGGCAcggtggcggaAAACATTGCCCGcttcGGCGA 
GGTGCAGGCCGACAAGGTGGTGGAGGCGGCGCGCCTGGCCGGGGTCCATGA