ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5648

TrivialName: PA14_48220

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_48220

PAO1 Ortholog Locus:

Sequence Length: 1620

Protein Length: 539

Start: 4294890

Stop: 4293271

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAF63987.1| (AF214673) unknown in vivo-induced protein 131-15 [Pseudomonas aeruginosa] Identities = 76/78 (97%), Positives = 77/78 (98%)

Sequence:

TTGCGGTATGCCGGCGCAGGTCGCGGCAGGAGCGTCCAACTGGCGCGGCGAGCGCCCGCTGAGCAGCGCCAG
TTCGTAGAGTGCCGCGCGCCGCCGCGCCTCGAGCATCGGCAGCGCGGCGCGGGTCCGCTCGCGCAAGGCCAG
CAGCCGGCGTCGCTGCAGCTCGCTGGAAAGGCCGGCGGCGAGCTGGCGTTCGCTCAGCGCCAGGCTCGCGTC
GAGCAGGCCGACCGATCGGCGTTGTACCTCTGCCCGTCGCGCCAGGGCGCAGGCGCGGACGTAGGCGAGGGT
GGTCTGGCTGGCCACGCTGACCCTGAGCAGGTCGCGCGCCGCTTGCGCCGCTTCGGCATCCGCCTTCGCCGC
GGCGATGCGGGCGCGGACTTCGCCCCACAGGTCCAACTGGTAGGACAGGTCGAGGCGGGCGGTGTGTTTCCA
CTGGCTGCGCAGCTCCTCGTCGGTGGCTTCGGCGAGGGTCTGGTCGTCGCCGTCGCGCCCATACTGGTAGCC
ATAGCCGACCTCGGTCCGTGGCCAGCGTTCGCCCTGTGCGCCGCGCAGATGGCCGAGGAGCGCGCGGGCATG
GGCATCGGCTGCGGCCAGGTCGCGGTTGTGGCGCAGCGCGGCGGCCACCAGGTGGTTCAGCCCAGGGTCCTG
GTAGAGCGTCCACCACTGGGCGGGCAGCGCGTCGCCGCGGGTTCCCGCCACCCTCGACAGGCCAGGGTCGAG
GCTTTCCGCGCGTGGCGCGGGTTGGTTGCGGTTCGCGCAGCCCAGCGCGGTGGAGATCCCCAGCGCCAGCGC
CACGCAACGCAGATGACTGGCAAGCGGCATTGCCCTGCTCCCGTGTCTGAAAGAGCGGGGAACGGTAAGGCA
GGCGCGGGCGGCCTGCGCCGGCAAAAGCGCCAGTCATCGTCGCGAAATGGACAGTCGGCGGATTTTTCAGCG
TTGTCGCATCAGGTACGGGCCGCAGCCCAGGGCCAGCAGCCCGGCCGGGATGGCCAGCAGGGAGATGCGGGC
GATCTGCCGGGAGTAGCGGTTCACCCCGGCAAAGCTGTCGGCCTTGGTGGCGGTCTCCCGGCGAAACCCCGG
TCGCGGCTTTCGGCGCGGCTGCGTTCGAGAAGGAACTCCACGGCGACCACGCCCAGCCAGAATGCGACGGCG
AACAGGCGAAGGGACAACGGCAACGGGTGTATGGCGCGCTCTCGCTGGTCTTTCAGGCGTTCTCCGGATGCC
GTCTCAGCCAGCGCAGGGCGTCGTCCCACAGCGCCTCTGCACCGGCGCGGAAGTAGCCCATGTGTCCGAGCG
GTCCACCGTCGGGTCGCAGGTCGAGGGTTTCCAGCGGTGCGTTGCGGTAGGCCTCGACGAAGGCGTCCCGCG
AGCGCGGCGGTGCCCAGGGATCGTCCAGGGCGGTGGCGAACAGACAGGGCGTGCGCACTGCGGCGTAGCGCT
GGTGGAGGTGGCGCATCGCCGGGTCGTCGAAATAGTAGCGGGGATGGCGGCACCAGCGCTTCCAGTCGCGGT
AGACCCCCAGCGGCAGGTCGTCGCCCATGCCCAGCAGGCTCCAGGCCATGTAGCCTTTCCAGGCCACCAGCG
GCGGCAGCACCAGGGTCCACAGCAGGCGCACCTTGA

Translation:

MRYAGAGRGRSVQLARRAPAEQRQFVECRAPPRLEHRQRGAGPLAQGQQPASLQLAGKAGGELAFAQRQARV
EQADRSALYLCPSRQGAGADVGEGGLAGHADPEQVARRLRRFGIRLRRGDAGADFAPQVQLVGQVEAGGVFP
LAAQLLVGGFGEGLVVAVAPILVAIADLGPWPAFALCAAQMAEERAGMGIGCGQVAVVAQRGGHQVVQPRVL
VERPPLGGQRVAAGSRHPRQARVEAFRAWRGLVAVRAAQRGGDPQRQRHATQMTGKRHCPAPVSERAGNGKA
GAGGLRRQKRQSSSRNGQSADFSALSHQVRAAAQGQQPGRDGQQGDAGDLPGVAVHPGKAVGLGGGLPAKPR
SRLSARLRSRRNSTATTPSQNATANRRRDNGNGCMARSRWSFRRSPDAVSASAGRRPTAPLHRRGSSPCVRA
VHRRVAGRGFPAVRCGRPRRRRPASAAVPRDRPGRWRTDRACALRRSAGGGGASPGRRNSSGDGGTSASSRG
RPPAAGRRPCPAGSRPCSLSRPPAAAAPGSTAGAP*

AnnotationID:5650 GeneID:5648

AnnotatorUID: diggins

Modification Date/Time: 2005-02-22 08:08:53

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:15512

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28428

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:5648

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

197337 gb|AAF63987.1| (AF214673) unknown in vivo-induced protein 131-15 [Pseudomonas aeruginosa] 653 11.79 11.79 575 389.0

GC ORFID: `48650`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `659018`	Stop: `660637`
Length: `1620`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGGTATGCCGGCGCAGGTCGCGGCAGGAGCGTCCAACTGGCGCGGCGAGCGCCCGCTGAGCAGCGCCAG TTCGTAGAGTGCCGCGCGCCGCCGCGCCTCGAGCATCGGCAGCGCGGCGCGGGTCCGCTCGCGCAAGGCCAG CAGCCGGCGTCGCTGCAGCTCGCTGGAAAGGCCGGCGGCGAGCTGGCGTTCGCTCAGCGCCAGGCTCGCGTC GAGCAGGCCGACCGATCGGCGTTGTACCTCTGCCCGTCGCGCCAGGGCGCAGGCGCGGACGTAGGCGAGGGT GGTCTGGCTGGCCACGCTGACCCTGAGCAGGTCGCGCGCCGCTTGCGCCGCTTCGGCATCCGCCTTCGCCGC GGCGATGCGGGCGCGGACTTCGCCCCACAGGTCCAACTGGTAGGACAGGTCGAGGCGGGCGGTGTGTTTCCA CTGGCTGCGCAGCTCCTCGTCGGTGGCTTCGGCGAGGGTCTGGTCGTCGCCGTCGCGCCCATACTGGTAGCC ATAGCCGACCTCGGTCCGTGGCCAGCGTTCGCCCTGTGCGCCGCGCAGATGGCCGAGGAGCGCGCGGGCATG GGCATCGGCTGCGGCCAGGTCGCGGTTGTGGCGCAGCGCGGCGGCCACCAGGTGGTTCAGCCCAGGGTCCTG GTAGAGCGTCCACCACTGGGCGGGCAGCGCGTCGCCGCGGGTTCCCGCCACCCTCGACAGGCCAGGGTCGAG GCTTTCCGCGCGTGGCGCGGGTTGGTTGCGGTTCGCGCAGCCCAGCGCGGTGGAGATCCCCAGCGCCAGCGC CACGCAACGCAGATGACTGGCAAGCGGCATTGCCCTGCTCCCGTGTCTGAAAGAGCGGGGAACGGTAAGGCA GGCGCGGGCGGCCTGCGCCGGCAAAAGCGCCAGTCATCGTCGCGAAATGGACAGTCGGCGGATTTTTCAGCG TTGTCGCATCAGGTACGGGCCGCAGCCCAGGGCCAGCAGCCCGGCCGGGATGGCCAGCAGGGAGATGCGGGC GATCTGCCGGGAGTAGCGGTTCACCCCGGCAAAGCTGTCGGCCTTGGTGGCGGTCTCCCGGCGAAACCCCGG TCGCGGCTTTCGGCGCGGCTGCGTTCGAGAAGGAACTCCACGGCGACCACGCCCAGCCAGAATGCGACGGCG AACAGGCGAAGGGACAACGGCAACGGGTGTATGGCGCGCTCTCGCTGGTCTTTCAGGCGTTCTCCGGATGCC GTCTCAGCCAGCGCAGGGCGTCGTCCCACAGCGCCTCTGCACCGGCGCGGAAGTAGCCCATGTGTCCGAGCG GTCCACCGTCGGGTCGCAGGTCGAGGGTTTCCAGCGGTGCGTTGCGGTAGGCCTCGACGAAGGCGTCCCGCG AGCGCGGCGGTGCCCAGGGATCGTCCAGGGCGGTGGCGAACAGACAGGGCGTGCGCACTGCGGCGTAGCGCT GGTGGAGGTGGCGCATCGCCGGGTCGTCGAAATAGTAGCGGGGATGGCGGCACCAGCGCTTCCAGTCGCGGT AGACCCCCAGCGGCAGGTCGTCGCCCATGCCCAGCAGGCTCCAGGCCATGTAGCCTTTCCAGGCCACCAGCG GCGGCAGCACCAGGGTCCACAGCAGGCGCACCTTGA