ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5645

TrivialName: PA14_48260

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_48260

PAO1 Ortholog Locus:

Sequence Length: 1407

Protein Length: 468

Start: 4295252

Stop: 4296658

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAC70262.1| (AP005031) putative translation initiation factor IF-2 [Streptomyces avermitilis MA-4680] Identities = 138/414 (33%), Positives = 158/414 (38%), Gaps = 76/414 (18%)

Sequence:

ATGCCGGCGAGCGCCAGCGGCGTGCCGACCTCCAGCGTGCCCTCGACGAGCAGCGCCACGCCTACCGGTTGG
CGCGCAGCAACTATCGCGCCGGCGCCCTCGATGCCCTCGAGCTGCTCGACAGTCAACGCAGCCTGGTCGCCG
ACCGGGCGCGCCTGGTCGACGCCGAGATGCGCGTCGCCGAGCGCCAGGTCGAACTGTTCCGGGCTCTCGGCG
GCGGCTGGCAAGCCGCTCCCAGCCCCTCCCACCAGGATAACGGACAATGAACCAGGCAATCAGGGAACCCAT
CGAACACACCACTGGCGAAACCATGCCAGCAGTCACGCGCCGGCGCCGAACCTGGCTGCTGGGCGGCCTCGC
CGGCGCCATCGCGCTCGCCGCCCTGCTGGCCTGGTGGTGGAGCAGCGGACGCTTCCTGGAGGGCACCGACGA
TGCCTATGTACGCGCCGACTGGGTGGCGGTCAGCGCGCAGGTCTCCGGCTACGTCGCCGAGGTGCTGGTGGC
CGACGACGCCGACGTCCAGGCCGGCGACCTGCTGCTGCGCCTGGACCCGCGCGACTTCCGCCAGCGCCTGCG
CGCCGCCGAGGCCCGCGAAGCGGCGGCGCAGGCGGCGCTGGAAGCCCAGCGCGCGAAGCTGGAGACCCTCGA
TCGGCAACTGCTGGAGCAGGTGCAGACGATCAGCCGCGCCCGCGCCGATGGCGAAGCGGCGCGAGCCGAATG
GCGCCGCGCCGAGACCGACTGGCGACGCTACCGGCAATTGGCCGACGAGCATGCCACCAGTCGCCAGCGCCT
GGAGAATGCCGACGCGGCGCACCAGCGAGCGCGGGCGGCGGCGCGGCGGGCAAGCGCCGAGGAAGGCCGCCA
GCGCGCCGCCAGGGACGTACTGAAGAGCCGGCGACGCGAGGCGGAGGCGGCGCTCGCCCAGCGCCAGGCGGA
GCTGCAGGAAGCCGCGGCGGCGCGCGAACTGGCGCGCCACGCCCTGGACGATACCGAAATCCGCGCCCCATT
CGCCGGCCGCGTCGGCCAGCGCAAGGTGCGCCTGCGCCAGTACGTCACGCCGGGGCTGCCGCTGCTGGCGGT
GGTGCCGCTGGAGCAGGCCTACGTGGTGGCCAACTACAAGGAGACCCAGCTCGAACACATCCGCCCCGGGCA
ACCGGTAGAGCTGGAGGTGGACACGTTCGGCCGCCGCTGGCGCGGCCGCGTCGACAGCGTGGCGCCGGCCTC
CGGCGCGGTATTCGCGCTGCTGCCGCCGGACAACGCCACCGGCAACTTCACCAAGATCGTCCAGCGCTTCCC
GGTGCGTATCCGCCTGGACACCGACGCCGCCGAGCGGGGCCGGCTGCTGCCGGGGATGTCGGTGATCGCCAC
CGTGGACACTCGCGAACCGGACGGAGCCTCCGCCGATGA

Translation:

MPASASGVPTSSVPSTSSATPTGWRAATIAPAPSMPSSCSTVNAAWSPTGRAWSTPRCASPSARSNCSGLSA
AAGKPLPAPPTRITDNEPGNQGTHRTHHWRNHASSHAPAPNLAAGRPRRRHRARRPAGLVVEQRTLPGGHRR
CLCTRRLGGGQRAGLRLRRRGAGGRRRRRPGRRPAAAPGPARLPPAPARRRGPRSGGAGGAGSPAREAGDPR
SATAGAGADDQPRPRRWRSGASRMAPRRDRLATLPAIGRRACHQSPAPGECRRGAPASAGGGAAGKRRGRPP
ARRQGRTEEPATRGGGGARPAPGGAAGSRGGARTGAPRPGRYRNPRPIRRPRRPAQGAPAPVRHAGAAAAGG
GAAGAGLRGGQLQGDPARTHPPRATGRAGGGHVRPPLARPRRQRGAGLRRGIRAAAAGQRHRQLHQDRPALP
GAYPPGHRRRRAGPAAAGDVGDRHRGHSRTGRSLRR*

AnnotationID:5647 GeneID:5645

AnnotatorUID: diggins

Modification Date/Time: 2005-02-01 07:07:36

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:11246

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28423

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37527

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5645_cdd.html

URL:

GC ORFID: `48647`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `658656`	Stop: `657250`
Length: `1407`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCCGGCGAGCGCCAGCGGCGTGCCGACCTCCAGCGTGCCCTCGACGAGCAGCGCCACGCCTACCGGTTGG CGCGCAGCAACTATCGCGCCGGCGCCCTCGATGCCCTCGAGCTGCTCGACAGTCAACGCAGCCTGGTCGCCG ACCGGGCGCGCCTGGTCGACGCCGAGATGCGCGTCGCCGAGCGCCAGGTCGAACTGTTCCGGGCTCTCGGCG GCGGCTGGCAAGCCGCTCCCAGCCCCTCCCACCAGGATAACGGACAATGAACCAGGCAATCAGGGAACCCAT CGAACACACCACTGGCGAAACCATGCCAGCAGTCACGCGCCGGCGCCGAACCTGGCTGCTGGGCGGCCTCGC CGGCGCCATCGCGCTCGCCGCCCTGCTGGCCTGGTGGTGGAGCAGCGGACGCTTCCTGGAGGGCACCGACGA TGCCTATGTACGCGCCGACTGGGTGGCGGTCAGCGCGCAGGTCTCCGGCTACGTCGCCGAGGTGCTGGTGGC CGACGACGCCGACGTCCAGGCCGGCGACCTGCTGCTGCGCCTGGACCCGCGCGACTTCCGCCAGCGCCTGCG CGCCGCCGAGGCCCGCGAAGCGGCGGCGCAGGCGGCGCTGGAAGCCCAGCGCGCGAAGCTGGAGACCCTCGA TCGGCAACTGCTGGAGCAGGTGCAGACGATCAGCCGCGCCCGCGCCGATGGCGAAGCGGCGCGAGCCGAATG GCGCCGCGCCGAGACCGACTGGCGACGCTACCGGCAATTGGCCGACGAGCATGCCACCAGTCGCCAGCGCCT GGAGAATGCCGACGCGGCGCACCAGCGAGCGCGGGCGGCGGCGCGGCGGGCAAGCGCCGAGGAAGGCCGCCA GCGCGCCGCCAGGGACGTACTGAAGAGCCGGCGACGCGAGGCGGAGGCGGCGCTCGCCCAGCGCCAGGCGGA GCTGCAGGAAGCCGCGGCGGCGCGCGAACTGGCGCGCCACGCCCTGGACGATACCGAAATCCGCGCCCCATT CGCCGGCCGCGTCGGCCAGCGCAAGGTGCGCCTGCGCCAGTACGTCACGCCGGGGCTGCCGCTGCTGGCGGT GGTGCCGCTGGAGCAGGCCTACGTGGTGGCCAACTACAAGGAGACCCAGCTCGAACACATCCGCCCCGGGCA ACCGGTAGAGCTGGAGGTGGACACGTTCGGCCGCCGCTGGCGCGGCCGCGTCGACAGCGTGGCGCCGGCCTC CGGCGCGGTATTCGCGCTGCTGCCGCCGGACAACGCCACCGGCAACTTCACCAAGATCGTCCAGCGCTTCCC GGTGCGTATCCGCCTGGACACCGACGCCGCCGAGCGGGGCCGGCTGCTGCCGGGGATGTCGGTGATCGCCAC CGTGGACACTCGCGAACCGGACGGAGCCTCCGCCGATGA