ViewGene

Locus Name:
GeneID:
Location:

GeneID:5644
TrivialName: PA14_48270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48270
PAO1 Ortholog Locus:
Sequence Length:1296
Protein Length:431
Start: 4296671
Stop: 4295376
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
TTGTCGTCAGCGCTCATCGGCGGAGGCTCCGTCCGGTTCGCGAGTGTCCACGGTGGCGATCACCGACATCCC
CGGCAGCAGCCGGCCCCGCTCGGCGGCGTCGGTGTCCAGGCGGATACGCACCGGGAAGCGCTGGACGATCTT
GGTGAAGTTGCCGGTGGCGTTGTCCGGCGGCAGCAGCGCGAATACCGCGCCGGAGGCCGGCGCCACGCTGTC
GACGCGGCCGCGCCAGCGGCGGCCGAACGTGTCCACCTCCAGCTCTACCGGTTGCCCGGGGCGGATGTGTTC
GAGCTGGGTCTCCTTGTAGTTGGCCACCACGTAGGCCTGCTCCAGCGGCACCACCGCCAGCAGCGGCAGCCC
CGGCGTGACGTACTGGCGCAGGCGCACCTTGCGCTGGCCGACGCGGCCGGCGAATGGGGCGCGGATTTCGGT
ATCGTCCAGGGCGTGGCGCGCCAGTTCGCGCGCCGCCGCGGCTTCCTGCAGCTCCGCCTGGCGCTGGGCGAG
CGCCGCCTCCGCCTCGCGTCGCCGGCTCTTCAGTACGTCCCTGGCGGCGCGCTGGCGGCCTTCCTCGGCGCT
TGCCCGCCGCGCCGCCGCCCGCGCTCGCTGGTGCGCCGCGTCGGCATTCTCCAGGCGCTGGCGACTGGTGGC
ATGCTCGTCGGCCAATTGCCGGTAGCGTCGCCAGTCGGTCTCGGCGCGGCGCCATTCGGCTCGCGCCGCTTC
GCCATCGGCGCGGGCGCGGCTGATCGTCTGCACCTGCTCCAGCAGTTGCCGATCGAGGGTCTCCAGCTTCGC
GCGCTGGGCTTCCAGCGCCGCCTGCGCCGCCGCTTCGCGGGCCTCGGCGGCGCGCAGGCGCTGGCGGAAGTC
GCGCGGGTCCAGGCGCAGCAGCAGGTCGCCGGCCTGGACGTCGGCGTCGTCGGCCACCAGCACCTCGGCGAC
GTAGCCGGAGACCTGCGCGCTGACCGCCACCCAGTCGGCGCGTACATAGGCATCGTCGGTGCCCTCCAGGAA
GCGTCCGCTGCTCCACCACCAGGCCAGCAGGGCGGCGAGCGCGATGGCGCCGGCGAGGCCGCCCAGCAGCCA
GGTTCGGCGCCGGCGCGTGACTGCTGGCATGGTTTCGCCAGTGGTGTGTTCGATGGGTTCCCTGATTGCCTG
GTTCATTGTCCGTTATCCTGGTGGGAGGGGCTGGGAGCGGCTTGCCAGCCGCCGCCGAGAGCCCGGAACAGT
TCGACCTGGCGCTCGGCGACGCGCATCTCGGCGTCGACCAGGCGCGCCCGGTCGGCGACCAGGCTGCGTTGA
Translation:
MSSALIGGGSVRFASVHGGDHRHPRQQPAPLGGVGVQADTHREALDDLGEVAGGVVRRQQREYRAGGRRHAV
DAAAPAAAERVHLQLYRLPGADVFELGLLVVGHHVGLLQRHHRQQRQPRRDVLAQAHLALADAAGEWGADFG
IVQGVARQFARRRGFLQLRLALGERRLRLASPALQYVPGGALAAFLGACPPRRRPRSLVRRVGILQALATGG
MLVGQLPVASPVGLGAAPFGSRRFAIGAGAADRLHLLQQLPIEGLQLRALGFQRRLRRRFAGLGGAQALAEV
ARVQAQQQVAGLDVGVVGHQHLGDVAGDLRADRHPVGAYIGIVGALQEASAAPPPGQQGGERDGAGEAAQQP
GSAPARDCWHGFASGVFDGFPDCLVHCPLSWWEGLGAACQPPPRARNSSTWRSATRISASTRRARSATRLR*
AnnotationID:5646GeneID:5644
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 08:08:53
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15507
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28421
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48646How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 657237Stop: 658532
Length: 1296
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGTCGTCAGCGCTCATCGGCGGAGGCTCCGTCCGGTTCGCGAGTGTCCACGGTGGCGATCACCGACATCCC
CGGCAGCAGCCGGCCCCGCTCGGCGGCGTCGGTGTCCAGGCGGATACGCACCGGGAAGCGCTGGACGATCTT
GGTGAAGTTGCCGGTGGCGTTGTCCGGCGGCAGCAGCGCGAATACCGCGCCGGAGGCCGGCGCCACGCTGTC
GACGCGGCCGCGCCAGCGGCGGCCGAACGTGTCCACCTCCAGCTCTACCGGTTGCCCGGGGCGGATGTGTTC
GAGCTGGGTCTCCTTGTAGTTGGCCACCACGTAGGCCTGCTCCAGCGGCACCACCGCCAGCAGCGGCAGCCC
CGGCGTGACGTACTGGCGCAGGCGCACCTTGCGCTGGCCGACGCGGCCGGCGAATGGGGCGCGGATTTCGGT
ATCGTCCAGGGCGTGGCGCGCCAGTTCGCGCGCCGCCGCGGCTTCCTGCAGCTCCGCCTGGCGCTGGGCGAG
CGCCGCCTCCGCCTCGCGTCGCCGGCTCTTCAGTACGTCCCTGGCGGCGCGCTGGCGGCCTTCCTCGGCGCT
TGCCCGCCGCGCCGCCGCCCGCGCTCGCTGGTGCGCCGCGTCGGCATTCTCCAGGCGCTGGCGACTGGTGGC
ATGCTCGTCGGCCAATTGCCGGTAGCGTCGCCAGTCGGTCTCGGCGCGGCGCCATTCGGCTCGCGCCGCTTC
GCCATCGGCGCGGGCGCGGCTGATCGTCTGCACCTGCTCCAGCAGTTGCCGATCGAGGGTCTCCAGCTTCGC
GCGCTGGGCTTCCAGCGCCGCCTGCGCCGCCGCTTCGCGGGCCTCGGCGGCGCGCAGGCGCTGGCGGAAGTC
GCGCGGGTCCAGGCGCAGCAGCAGGTCGCCGGCCTGGACGTCGGCGTCGTCGGCCACCAGCACCTCGGCGAC
GTAGCCGGAGACCTGCGCGCTGACCGCCACCCAGTCGGCGCGTACATAGGCATCGTCGGTGCCCTCCAGGAA
GCGTCCGCTGCTCCACCACCAGGCCAGCAGGGCGGCGAGCGCGATGGCGCCGGCGAGGCCGCCCAGCAGCCA
GGTTCGGCGCCGGCGCGTGACTGCTGGCATGGTTTCGCCAGTGGTGTGTTCGATGGGTTCCCTGATTGCCTG
GTTCATTGTCCGTTATCCTGGTGGGAGGGGCTGGGAGCGGCTTGCCAGCCGCCGCCGAGAGCCCGGAACAGT
TCGACCTGGCGCTCGGCGACGCGCATCTCGGCGTCGACCAGGCGCGCCCGGTCGGCGACCAGGCTGCGTTGA