ViewGene
Locus Name:
GeneID:
Location:

GeneID:5642
TrivialName: PA14_48360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48360
PAO1 Ortholog Locus:
Sequence Length:1188
Protein Length:395
Start: 4301997
Stop: 4303184
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
GTGCCGCGCGGTCCCCGCCTGCAGCACCTCGACACTGCCGGTCATGCCGGCGGCAAGCACCACGCCCGCCGG
TACCCGGTCGAGTTCGATGCGCACCGGCACGCGCTGCGCCAGGCGTATCCAGCTGAAGTTCGGGCTGACCTG
CGGCAGGCCGCTGTCGGCACGGCTTTCGTTGAGGTCGGCGACACCGCGACCGATGCTCGCGACATGGCCGTC
GAGCAGCGGATCGAACCCCATCAGCTTGATCGTCGCCGGCGCGCCGACCTGTACATTGCGCAGCTTGGTTTC
CTCGAAATAGCCGGTGACCCAGAAGCTTCGCCGATCGACGATGAAGATGTTGGTCCGGCCCGCCGCCGCGTA
ATCGCCGGGCTGCACGCGCAACTGCGTCACATAGCCGTCCACCGGCGAGCGCAACTCGCTGCGCCGCAGGTC
CAGCCGCGCCTGGTCGAGCGCCGCCCCAGCGGCCTCGGCGCGGGCGCGGGCGATACGCAGGGCGCGACCGGC
GTTGGCGACCTCCTCGCGCGAAACCGCGCCGGCCAACTGCATGCGTCGGCGCCATTGCTCGTCACGTTGGCG
CAGGGTTTCCCGCGCCTGCTCCAGCTCCGCCTCGCGCTGGCGCACGGCCAGGCGATAGCTGCGCGGATCGAT
GCGGTACAGCGGATCGCCGCGGGCCACCCGCTGGTTATCTGCGACGAGCACCGCCTCGACGCTGCCGGAAAC
TTCCGGCGCGATGCGAATCACCTGCGCGCTGACCCGCCCGTCGCGGGTCCAGGGCGCCAGCACGTAGGCTTG
CCACAACTGCAACGCCAGGCACAGGGCGAGCAGGCCGCAGGCGAAGGTCGCAGCCACCTTGGAAAGACGAAC
GATGGACATGGGGACCTCGGCTCAGAACTTCAGCACCAGCACGGACAGCACGATGAACGACAGGAAGAAACG
CAGCAGGCCGGGATGCCAGGCGCATTCCAGCCAGCGCCAGGCGAGGCGCTCCAGCAGCAGGTAGAGCGGCAT
CGCCAGGCACAGGTAGAGGAACAATGGCGGCACGTAGAGGCCGGAAACGGAGACTTCGCTCAGCATGCAGGG
CACCAGGGTATCGAGGGCGCGGAGCGGTCGGCCGCTCCTGTCGGGTTGAGGAGCACAGGCTACGGGTCGTGG
CGATTTGCAAATATCGACTACTCAGCCAGAAAATAA
Translation:
MPRGPRLQHLDTAGHAGGKHHARRYPVEFDAHRHALRQAYPAEVRADLRQAAVGTAFVEVGDTATDARDMAV
EQRIEPHQLDRRRRADLYIAQLGFLEIAGDPEASPIDDEDVGPARRRVIAGLHAQLRHIAVHRRAQLAAPQV
QPRLVERRPSGLGAGAGDTQGATGVGDLLARNRAGQLHASAPLLVTLAQGFPRLLQLRLALAHGQAIAARID
AVQRIAAGHPLVICDEHRLDAAGNFRRDANHLRADPPVAGPGRQHVGLPQLQRQAQGEQAAGEGRSHLGKTN
DGHGDLGSELQHQHGQHDERQEETQQAGMPGAFQPAPGEALQQQVERHRQAQVEEQWRHVEAGNGDFAQHAG
HQGIEGAERSAAPVGLRSTGYGSWRFANIDYSARK*
AnnotationID:5644GeneID:5642
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 08:08:18
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15504




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28417




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48644How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 651911Stop: 650724

          
Length: 1188


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCCGCGCGGTCCCCGCCTGCAGCACCTCGACACTGCCGGTCATGCCGGCGGCAAGCACCACGCCCGCCGG 
TACCCGGTCGAGTTCGATGCGCACCGGCACGCGCTGCGCCAGGCGTATCCAGCTGAAGTTCGGGCTGACCTG 
CGGCAGGCCGCTGTCGGCACGGCTTTCGTTGAGGTCGGCGACACCGCGACCGATGCTCGCGACATGGCCGTC 
GAGCAGCGGATCGAACCCCATCAGCTTGATCGTCGCCGGCGCGCCGACCTGTACATTGCGCAGCTTGGTTTC 
CTCGAAATAGCCGGTGACCCAGAAGCTTCGCCGATCGACGATGAAGATGTTGGTCCGGCCCGCCGCCGCGTA 
ATCGCCGGGCTGCACGCGCAACTGCGTCACATAGCCGTCCACCGGCGAGCGCAACTCGCTGCGCCGCAGGTC 
CAGCCGCGCCTGGTCGAGCGCCGCCCCAGCGGCCTCGGCGCGGGCGCGGGCGATACGCAGGGCGCGACCGGC 
GTTGGCGACCTCCTCGCGCGAAACCGCGCCGGCCAACTGCATGCGTCGGCGCCATTGCTCGTCACGTTGGCG 
CAGGGTTTCCCGCGCCTGCTCCAGCTCCGCCTCGCGCTGGCGCACGGCCAGGCGATAGCTGCGCGGATCGAT 
GCGGTACAGCGGATCGCCGCGGGCCACCCGCTGGTTATCTGCGACGAGCACCGCCTCGACGCTGCCGGAAAC 
TTCCGGCGCGATGCGAATCACCTGCGCGCTGACCCGCCCGTCGCGGGTCCAGGGCGCCAGCACGTAGGCTTG 
CCACAACTGCAACGCCAGGCACAGGGCGAGCAGGCCGCAGGCGAAGGTCGCAGCCACCTTGGAAAGACGAAC 
GATGGACATGGGGACCTCGGCTCAGAACTTCAGCACCAGCACGGACAGCACGATGAACGACAGGAAGAAACG 
CAGCAGGCCGGGATGCCAGGCGCATTCCAGCCAGCGCCAGGCGAGGCGCTCCAGCAGCAGGTAGAGCGGCAT 
CGCCAGGCACAGGTAGAGGAACAATGGCGGCACGTAGAGGCCGGAAACGGAGACTTCGCTCAGCATGCAGGG 
CACCAGGGTATCGAGGGCGCGGAGCGGTCGGCCGCTCCTGTCGGGTTGAGGAGCACAGGCTACGGGTCGTGG 
CGATTTGCAAATATCGACTACTCAGCCAGAAAATAA