ViewGene
Locus Name:
GeneID:
Location:

GeneID:5606
TrivialName: PA14_50120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50120
PAO1 Ortholog Locus:
Sequence Length:822
Protein Length:273
Start: 4453960
Stop: 4454781
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGGTCGCCTGTTCGCGCTGTTGCTCGAACAGTTGCTTCACTGCCTGCGCCAGGCGCGTCTCGATGGTCGC
GTCGATGCGACTGTGCTCGGTCTCGATGCGGCAGCCGCCGGGCAGCAACGAATCGTCCTCGAGAATCCGCCA
GCTCTCTTCGTGGCGCTCGCGCAGCGCCTTGACCCGCTCGAAGTCCTGCGGGTTAACATGGATACGGATGTT
CGCCGCGCCCATCGGCAGCAGCTTCAGAGCCTCGCGCAGGACCTGGCGGACATGGCTGGAGTCCATGTGCAG
TTCGCGCTGGATCACCTGGCGGGCAACGTGGTTGACCAGGTTGACCATGCCCTGCTCGATCAGGGCGTCCTG
CTCGGCGATGGGTTCCAGGAGCTGCGTCATCAGACGCTCGAGACTTTGCAGGCGCTCCTTCAGCGCCTCCTC
GGCTTCCTGCCGCGCCTTCAACTGGCCGGCGTGGAAACCGTCGCGCTCGCCGGTGGCGAAACCTTCATTGTA
GGCGTCCTGGCGGATCGCCTCGATCTCCTCCAGCGTCGGCGGCTTGACGGTCTCCAGCTCGACCTCTTCCAC
CGCCGCCGGCGCCGGCGCGGGTTCGGCGACCGCGGGCACCTGCGGCGCGGCAACGGCCGGCTCGTCGCGCGG
CTCGTCGAAGCTCGGCAACGACCAGAGGCCGAAGGCCGCCACGTCCTTGCCGCGGATCAGTTCGCTGGGATT
GTCTTTGTCCTTGTCGTGGGGGACCACCTCAGATCATCTCCTCGCCACCCTTGCCGCCCAGCACGATATCGC
CGGACTCGGCCATGCGCCGGGCAATGGTGA
Translation:
MGRLFALLLEQLLHCLRQARLDGRVDATVLGLDAAAAGQQRIVLENPPALFVALAQRLDPLEVLRVNMDTDV
RRAHRQQLQSLAQDLADMAGVHVQFALDHLAGNVVDQVDHALLDQGVLLGDGFQELRHQTLETLQALLQRLL
GFLPRLQLAGVETVALAGGETFIVGVLADRLDLLQRRRLDGLQLDLFHRRRRRRGFGDRGHLRRGNGRLVAR
LVEARQRPEAEGRHVLAADQFAGIVFVLVVGDHLRSSPRHPCRPARYRRTRPCAGQW*
AnnotationID:5608GeneID:5606
AnnotatorUID: danlee
Modification Date/Time: 2004-06-21 16:04:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28349




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48608How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 499948Stop: 499127

          
Length: 822


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGGTCGCCTGTTCGCGCTGTTGCTCGAACAGTTGCTTCACTGCCTGCGCCAGGCGCGTCTCGATGGTCGC 
GTCGATGCGACTGTGCTCGGTCTCGATGCGGCAGCCGCCGGGCAGCAACGAATCGTCCTCGAGAATCCGCCA 
GCTCTCTTCGTGGCGCTCGCGCAGCGCCTTGACCCGCTCGAAGTCCTGCGGGTTAACATGGATACGGATGTT 
CGCCGCGCCCATCGGCAGCAGCTTCAGAGCCTCGCGCAGGACCTGGCGGACATGGCTGGAGTCCATGTGCAG 
TTCGCGCTGGATCACCTGGCGGGCAACGTGGTTGACCAGGTTGACCATGCCCTGCTCGATCAGGGCGTCCTG 
CTCGGCGATGGGTTCCAGGAGCTGCGTCATCAGACGCTCGAGACTTTGCAGGCGCTCCTTCAGCGCCTCCTC 
GGCTTCCTGCCGCGCCTTCAACTGGCCGGCGTGGAAACCGTCGCGCTCGCCGGTGGCGAAACCTTCATTGTA 
GGCGTCCTGGCGGATCGCCTCGATCTCCTCCAGCGTCGGCGGCTTGACGGTCTCCAGCTCGACCTCTTCCAC 
CGCCGCCGGCGCCGGCGCGGGTTCGGCGACCGCGGGCACCTGCGGCGCGGCAACGGCCGGCTCGTCGCGCGG 
CTCGTCGAAGCTCGGCAACGACCAGAGGCCGAAGGCCGCCACGTCCTTGCCGCGGATCAGTTCGCTGGGATT 
GTCTTTGTCCTTGTCGTGGGGGACCACCTCAGATCATCTCCTCGCCACCCTTGCCGCCCAGCACGATATCGC 
CGGACTCGGCCATGCGCCGGGCAATGGTGA