ViewGene

Locus Name:
GeneID:
Location:

GeneID:5597
TrivialName: PA14_50390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50390
PAO1 Ortholog Locus:
Sequence Length:1152
Protein Length:383
Start: 4477985
Stop: 4479136
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC72133.1| (AP005039) putative regulatory protein [Streptomyces avermitilis MA-4680]
Identities = 98/370 (26%), Positives = 139/370 (37%), Gaps = 50/370 (13%)
Sequence:
GTGGAAGCTCTGCTCGAACGACGAGTAGGAGCGGAACGCCGCGACCTCCTTGACCGCCTTGCCGCCTTCGTA
TTCGGTGGTGAGGGCGCGCGCCGAGGCACCATCCCAGCGGCTGCCGGTCTTGATGCCGAACAGGTTGTGGCT
GCTGCCGCCATCCTGCTGGCGGATGATCGATTTGCCCCAGCCGGTCTCCAGCGCGGCCTGGGCCACCAGGTA
GCGGGCATCGACGCCGATCCGCTCGGCGGCCTTCTGGGCCATCGGCAGCATGGTGGCGATGAACTCGTCGGC
CGAGGCGAACATCGACTTGCCCCTGGCCAGCGGCGGCTGGGCGATGCGCCGGCTGCCCTGGCTGTCGACGCC
ATCGGTGGAGAAACCGCGGCGGCTCGCCGCCGGGTAGCTCTGCGCCGGCAGGTAGCTGTCCTGGCCCAGGCT
CTGCATCTGGCTGGCGGCCGGCGAGGCGGAGGGAACGATGCCGGCGAGCATGCGCTCGGCCAGCTTGCCCGG
CAGCGCCAGGCGCCTCTGGTTGAGCAGCTTCGAGTCGTCGCGGCCGGCTTCCGGCATCGGCAGGGCCTTGCC
GGCCTGCGCGCTGGGGTTGCTCGGCCAGCGACCGGCGCCGTTCTCGGCGACCCGGGCGAACGGGTTTTCGCC
GTTGCCCCTGGAGCCTTGCTTCATCTTCGACAACTGGCGCACCAGCACGTCGGCCAGGCCGATGCCGCCGGC
ATTCTTCGACAGGCTCACCGACAGTTGCTGGTCGTACATGTCCTGGTACTGCTTGGTGGTCTGGCTGTTCAT
GAAATTGCCGTCGCCCAGCGCTTCGTTGGCCGAACGCATGGACTTGAGCATCTCGTTGAGGAACAGCGATTC
GAATTCCTGGGCGACCTTGCGGATGTTCGCCTCGCCGTCGCGGTCCTTGCCGACCTTGAGCTGGTTGAGGCG
GTTGAGATCGGTATAGGAGCCGCTGTCGGGGCCTGCGCCGATACCGCTGAGCAAACGGGAATCCATGGCGTC
GTCCTCAGATCACGATCAGGTCGGCCTGCAACGCGCCGGCCTGCTTCAGGGCTTCGAGGATCGCCATCAGGT
CGCTCGGCGCGGCGCCGACCTGGTTCACCGCGCGGACGATGTCGTCCAGGGTGGTGCCGGGACCGAACTTGA
Translation:
MEALLERRVGAERRDLLDRLAAFVFGGEGARRGTIPAAAGLDAEQVVAAAAILLADDRFAPAGLQRGLGHQV
AGIDADPLGGLLGHRQHGGDELVGRGEHRLAPGQRRLGDAPAALAVDAIGGETAAARRRVALRRQVAVLAQA
LHLAGGRRGGGNDAGEHALGQLARQRQAPLVEQLRVVAAGFRHRQGLAGLRAGVARPATGAVLGDPGERVFA
VAPGALLHLRQLAHQHVGQADAAGILRQAHRQLLVVHVLVLLGGLAVHEIAVAQRFVGRTHGLEHLVEEQRF
EFLGDLADVRLAVAVLADLELVEAVEIGIGAAVGACADTAEQTGIHGVVLRSRSGRPATRRPASGLRGSPSG
RSARRRPGSPRGRCRPGWCRDRT*
AnnotationID:5599GeneID:5597
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15457
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28331
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48599How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 475923Stop: 474772
Length: 1152
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGAAGCTCTGCTCGAACGACGAGTAGGAGCGGAACGCCGCGACCTCCTTGACCGCCTTGCCGCCTTCGTA
TTCGGTGGTGAGGGCGCGCGCCGAGGCACCATCCCAGCGGCTGCCGGTCTTGATGCCGAACAGGTTGTGGCT
GCTGCCGCCATCCTGCTGGCGGATGATCGATTTGCCCCAGCCGGTCTCCAGCGCGGCCTGGGCCACCAGGTA
GCGGGCATCGACGCCGATCCGCTCGGCGGCCTTCTGGGCCATCGGCAGCATGGTGGCGATGAACTCGTCGGC
CGAGGCGAACATCGACTTGCCCCTGGCCAGCGGCGGCTGGGCGATGCGCCGGCTGCCCTGGCTGTCGACGCC
ATCGGTGGAGAAACCGCGGCGGCTCGCCGCCGGGTAGCTCTGCGCCGGCAGGTAGCTGTCCTGGCCCAGGCT
CTGCATCTGGCTGGCGGCCGGCGAGGCGGAGGGAACGATGCCGGCGAGCATGCGCTCGGCCAGCTTGCCCGG
CAGCGCCAGGCGCCTCTGGTTGAGCAGCTTCGAGTCGTCGCGGCCGGCTTCCGGCATCGGCAGGGCCTTGCC
GGCCTGCGCGCTGGGGTTGCTCGGCCAGCGACCGGCGCCGTTCTCGGCGACCCGGGCGAACGGGTTTTCGCC
GTTGCCCCTGGAGCCTTGCTTCATCTTCGACAACTGGCGCACCAGCACGTCGGCCAGGCCGATGCCGCCGGC
ATTCTTCGACAGGCTCACCGACAGTTGCTGGTCGTACATGTCCTGGTACTGCTTGGTGGTCTGGCTGTTCAT
GAAATTGCCGTCGCCCAGCGCTTCGTTGGCCGAACGCATGGACTTGAGCATCTCGTTGAGGAACAGCGATTC
GAATTCCTGGGCGACCTTGCGGATGTTCGCCTCGCCGTCGCGGTCCTTGCCGACCTTGAGCTGGTTGAGGCG
GTTGAGATCGGTATAGGAGCCGCTGTCGGGGCCTGCGCCGATACCGCTGAGCAAACGGGAATCCATGGCGTC
GTCCTCAGATCACGATCAGGTCGGCCTGCAACGCGCCGGCCTGCTTCAGGGCTTCGAGGATCGCCATCAGGT
CGCTCGGCGCGGCGCCGACCTGGTTCACCGCGCGGACGATGTCGTCCAGGGTGGTGCCGGGACCGAACTTGA