ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5588

TrivialName: PA14_51130

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_51130

PAO1 Ortholog Locus:

Sequence Length: 1965

Protein Length: 654

Start: 4546100

Stop: 4544136

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAE33586.1| (BX640446) conserved hypothetical protein [Bordetella bronchiseptica] Identities = 47/119 (39%), Positives = 66/119 (55%)

Sequence:

GTGGAGCGACGGCTCGTTCCGCACTCGCGTCGTCGAGCGCGATGTGGTGGTGCTGGACAACGGCCGGGTAGG
TCCGCCGCCAGAGCGGCCGGACTGAAGCGAAGGGCGGTGGCGCGAGGGAACGACCGTCGGGCTGCCGTGAAG
ATCAACCGAAATCCTGCTTGCGAGAACAAGAATAATGAATGCAACCGCGCTTTCCCCGAACCCGGCGCCGGC
CATTTCCCGGCGCACCATGCTGATCGCCTTCGTCTTCTGCTTCCTCGGCCTGCTCGCCGACGGCGTCGACCT
GATGTTCCTGGCCTACAGCCTCAACAGCCTGAAGGCCGAATTCGGCCTGAGCAACTTCGAAGCCGGCTCCCT
CGGCAGCCTGACTCTCGCCGGCATGGCCGTCGGCGGTATCTATGGCGGCTGGTGCTGCGACCGCTTCGGCCG
GGTGCGAGTGGTGACCTGGACCATCGTGCTGTTCTCCATCGGTACCGCGTTGCTGGGGCTGACCCAGAACTA
CTGGCAGTTCGCGCTGATCCGCTTCGTCGCCTCGCTCGGCCTCGGCTCGCTGTTCGTCGCCTGCAACATCCT
GATGTCCGAGTGCGTCGGAACCAGGTACCGCACCACCATCCTCGCCGCCATGCAGGCCGGCTGGACCGTGGG
CTACCTGGTGGCGACCCTGCTGGCGGGGCAGATCATCCCCGAGTTCGGCTGGCGCACCTTGTTCTTCACCGC
CGTGGCGCCGGCGTTGGTCTGCCTGGCCCTGCGGCCCTGGGTGCCGGAGTCGCCGTCCTGGCTCGCGGCCCA
GGCCGGGCGCCAGCGTCCCGGCGCGGCTCCGCAGAGCCACGCCGAGGCTGGCGGCGCCGGCCCGCTGGGACG
GATGCTGGGCGATCCGGAAACGCGCGGCATGTTCCTGCTCTGGAGCCTCACCTCCTGCTTCCTGCTGTTCGG
CTACTACGGCACCAACAACTGGATGCCGTCCTACCTGGAGAGCGAGTTGGGGATGAACTTCAAGTCGATGAC
CGGCTACATGGTCGGCACCTACAGCGCGATGATCCTCGGCAAGGTCGCCGCCGGTGTCTGCGCCGATCTCTT
CGGCCGGCGCCTGACCTTCGCCGCCGGGGCCATCGGCAGCGCCGCCTTCATGCCGTTGATCGTGTTCTACCA
CTCGCCCTCCAACATCCTCTGGATCCTCATCACCTTCGGCTTCATCTACGGCGTTCCGGTCGGGGTGCTGGC
AACCTACATGACCGAGAGCTTCTCCACCCGCGTCCGCGGCTCGGCGGTGGGCACCGCCTACAACCTGGGGCG
TATCGGCGCGGCGGTGGCGCCCGCCGGCATCGGCCTGCTGGCCACCCACGTGTCGATCGGCGCGGGTTTCCT
GGTGATGGGCATCACCTACGTGCTCACCGGGCTGATCCCGGCGCTGTTCATTGCGGACCGGCTCTACGACCC
GAACCGCGAGTCCCGCGATGCCGAGAGCGCTTCCCGACGGCAAGCGCCGGGCAGTGCCGTGGATACCGCCGA
GCGGCGCGCGGCCAAGGCCTGATCCTGCGGAAGGAGTGCACATCCATGAGTTCTTTTCCACGACAGCCAGCG
GCGGAGCAGCGGCCCGCCAGCTTCCAGGAGTTCATCGGCCTCGAGCGCTGGACCGATGCCGACGGGATGGCG
CGGGTGCGCTTGGGGCATCGCCCGGAACTGATGAACTACCTGCAACAGTTCCACGGCGGGGTGTTGATGTCG
GTGCTGGACGCCGCCATGGCCCAGGCGATCCGTGCCTGCCTGCCGGACTGCTCGATGGTGACCATCGACATG
GCTACCCACTTCATGGGGAGCGCCCGCGGCGAGCTTCGTGCGGTTGGCAGGGTAGTGCGACGGACCCGCACG
ATCTGCTTCTGCACGGCGGAAATCTGCAACGAGGACGGCGAGGTCATCGCCATGGCCTCGGGCAGCTTCAGG
TACCGCGCGGCTAAGCCGTAG

Translation:

MERRLVPHSRRRARCGGAGQRPGRSAARAAGLKRRAVARGNDRRAAVKINRNPACENKNNECNRAFPEPGAG
HFPAHHADRLRLLLPRPARRRRRPDVPGLQPQQPEGRIRPEQLRSRLPRQPDSRRHGRRRYLWRLVLRPLRP
GASGDLDHRAVLHRYRVAGADPELLAVRADPLRRLARPRLAVRRLQHPDVRVRRNQVPHHHPRRHAGRLDRG
LPGGDPAGGADHPRVRLAHLVLHRRGAGVGLPGPAALGAGVAVLARGPGRAPASRRGSAEPRRGWRRRPAGT
DAGRSGNARHVPALEPHLLLPAVRLLRHQQLDAVLPGERVGDELQVDDRLHGRHLQRDDPRQGRRRCLRRSL
RPAPDLRRRGHRQRRLHAVDRVLPLALQHPLDPHHLRLHLRRSGRGAGNLHDRELLHPRPRLGGGHRLQPGA
YRRGGGARRHRPAGHPRVDRRGFPGDGHHLRAHRADPGAVHCGPALRPEPRVPRCRERFPTASAGQCRGYRR
AARGQGLILRKECTSMSSFPRQPAAEQRPASFQEFIGLERWTDADGMARVRLGHRPELMNYLQQFHGGVLMS
VLDAAMAQAIRACLPDCSMVTIDMATHFMGSARGELRAVGRVVRRTRTICFCTAEICNEDGEVIAMASGSFR
YRAAKP*

AnnotationID:5590 GeneID:5588

AnnotatorUID: danlee

Modification Date/Time: 2004-05-18 17:05:45

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2050, PaaI, Uncharacterized protein, possibly involved in aromatic compounds 
catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
       CD-Length = 141 residues,  99.3% aligned
       Score = 71.6 bits (175), Expect = 2e-13

Genomic Context:

Comment:

ReferenceID:15452

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17003

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search.

Reference Type: Blast (text/plain)

Data: 5588_CDS.cgi

URL:

ReferenceID:28313

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `48590`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `407808`	Stop: `409772`
Length: `1965`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGAGCGACGGCTCGTTCCGCACTCGCGTCGTCGAGCGCGATGTGGTGGTGCTGGACAACGGCCGGGTAGG TCCGCCGCCAGAGCGGCCGGACTGAAGCGAAGGGCGGTGGCGCGAGGGAACGACCGTCGGGCTGCCGTGAAG ATCAACCGAAATCCTGCTTGCGAGAACAAGAATAATGAATGCAACCGCGCTTTCCCCGAACCCGGCGCCGGC CATTTCCCGGCGCACCATGCTGATCGCCTTCGTCTTCTGCTTCCTCGGCCTGCTCGCCGACGGCGTCGACCT GATGTTCCTGGCCTACAGCCTCAACAGCCTGAAGGCCGAATTCGGCCTGAGCAACTTCGAAGCCGGCTCCCT CGGCAGCCTGACTCTCGCCGGCATGGCCGTCGGCGGTATCTATGGCGGCTGGTGCTGCGACCGCTTCGGCCG GGTGCGAGTGGTGACCTGGACCATCGTGCTGTTCTCCATCGGTACCGCGTTGCTGGGGCTGACCCAGAACTA CTGGCAGTTCGCGCTGATCCGCTTCGTCGCCTCGCTCGGCCTCGGCTCGCTGTTCGTCGCCTGCAACATCCT GATGTCCGAGTGCGTCGGAACCAGGTACCGCACCACCATCCTCGCCGCCATGCAGGCCGGCTGGACCGTGGG CTACCTGGTGGCGACCCTGCTGGCGGGGCAGATCATCCCCGAGTTCGGCTGGCGCACCTTGTTCTTCACCGC CGTGGCGCCGGCGTTGGTCTGCCTGGCCCTGCGGCCCTGGGTGCCGGAGTCGCCGTCCTGGCTCGCGGCCCA GGCCGGGCGCCAGCGTCCCGGCGCGGCTCCGCAGAGCCACGCCGAGGCTGGCGGCGCCGGCCCGCTGGGACG GATGCTGGGCGATCCGGAAACGCGCGGCATGTTCCTGCTCTGGAGCCTCACCTCCTGCTTCCTGCTGTTCGG CTACTACGGCACCAACAACTGGATGCCGTCCTACCTGGAGAGCGAGTTGGGGATGAACTTCAAGTCGATGAC CGGCTACATGGTCGGCACCTACAGCGCGATGATCCTCGGCAAGGTCGCCGCCGGTGTCTGCGCCGATCTCTT CGGCCGGCGCCTGACCTTCGCCGCCGGGGCCATCGGCAGCGCCGCCTTCATGCCGTTGATCGTGTTCTACCA CTCGCCCTCCAACATCCTCTGGATCCTCATCACCTTCGGCTTCATCTACGGCGTTCCGGTCGGGGTGCTGGC AACCTACATGACCGAGAGCTTCTCCACCCGCGTCCGCGGCTCGGCGGTGGGCACCGCCTACAACCTGGGGCG TATCGGCGCGGCGGTGGCGCCCGCCGGCATCGGCCTGCTGGCCACCCACGTGTCGATCGGCGCGGGTTTCCT GGTGATGGGCATCACCTACGTGCTCACCGGGCTGATCCCGGCGCTGTTCATTGCGGACCGGCTCTACGACCC GAACCGCGAGTCCCGCGATGCCGAGAGCGCTTCCCGACGGCAAGCGCCGGGCAGTGCCGTGGATACCGCCGA GCGGCGCGCGGCCAAGGCCTGATCCTGCGGAAGGAGTGCACATCCATGAGTTCTTTTCCACGACAGCCAGCG GCGGAGCAGCGGCCCGCCAGCTTCCAGGAGTTCATCGGCCTCGAGCGCTGGACCGATGCCGACGGGATGGCG CGGGTGCGCTTGGGGCATCGCCCGGAACTGATGAACTACCTGCAACAGTTCCACGGCGGGGTGTTGATGTCG GTGCTGGACGCCGCCATGGCCCAGGCGATCCGTGCCTGCCTGCCGGACTGCTCGATGGTGACCATCGACATG GCTACCCACTTCATGGGGAGCGCCCGCGGCGAGCTTCGTGCGGTTGGCAGGGTAGTGCGACGGACCCGCACG ATCTGCTTCTGCACGGCGGAAATCTGCAACGAGGACGGCGAGGTCATCGCCATGGCCTCGGGCAGCTTCAGG TACCGCGCGGCTAAGCCGTAG