ViewGene
Locus Name:
GeneID:
Location:

GeneID:5581
TrivialName: PA14_51870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51870
PAO1 Ortholog Locus:
Sequence Length:1308
Protein Length:435
Start: 4607473
Stop: 4606166
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE31530.1| (BX640440) 3-hydroxyisobutyrate dehydrogenase [Bordetella bronchiseptica]
Identities = 54/175 (30%), Positives = 73/175 (41%), Gaps = 35/175 (20%)
Sequence:
GTGCCAGGCCTGGCGGATGCGGAACGACAGGTCCTTGGCCGGACCGGACTGGACCACGTACTTGGCTTCGAG
GTTGGTCTCGTGGTGCTTGCCGTCCTCGCCGTAGCCGTAGTTCTTATAGCCGACGTTGTTGTCAGACATCTT
GGTGCCATCGATGTCCTTGCCATTGATATAGCGGACCATGAAAGTCAGGCCGGGAACGCCATAGGAGGCGAG
GTTCAGGTCGTAGCGGGCCTGCCAGGATTTCTCGCCGGGGCCGTTGAAGTCGGAGTACTGCACGGAGTTGGC
GAGGAAAATCGAGTCACCGCCGCCGCCGGAACCGTTCTCGCCGAAGCCGATATAATCAAACGGCTGATCGCC
ATGGACCTTCTGGTAGGCCAAGGTGAAAGTGTGCGCATCCAGAGTGTAGGCTGCCGCCAGGGACCAAGTGGT
GTTGCTGATGTCGCCGGCCTTGGCCTTGCCTTCATCGTTTGTGCGGTAGATGTTGAAATCGAAGCCCAGCGA
TTGGTCGGATGCCAGTGGGATGGTGTAGTTGCTGTTCAGGTAATACTGACGATAGATGTCTTCGAGTTCAGC
ACCGTACAGGGAGGCGCTGAGGTTATCGGTGATTGCGTAGCGGCCCCCAATGAAATCGGCGCTCTTGGCGGT
CTCGCCTGCATAGGTTGCGTAGAGTTCGCCGCGCGACTTGGTGGTGGTGCCCTGCTTGCCTTCGGTGAAGTG
GCCCGCTTCGAGATCGAGCCCTTCGAGTTCGCTGCTCTGCAGTTGGAAGCCGGTCGCGGTCTGCGGGAACAG
GCGGCTGCCGCCGGCGGCGAAGACCGGAGCGGTCGGCTGCATCTCGCCCCACTTCAACATGGTCTTGGAGAT
GCGTACCTTCACGGCGCCACCGGCGCGGCTGTAGTCGTCACGGGGCGTGCCGTCGTTCATCACTGGCAGGTT
GCCGGTACCGCTCTTGTCGGAGGTGCCGTCGAGCTTCAGACCGAGGTAGCCGAAGGCATCGACGCCGAAGCC
GACGGTGCCTTGGGTGAAGCCGGATTCATAGGTGGTGAGGAAGCCTTGGGTCCAGTCGACGCGGTCCCCGCT
GCCGCTCTTGCCGTCACGGTTGAAATAGTAGTTGCGGAGCAGCAGGTCGAGGCTGCTGTCTTCGATGAACCC
CTTCGCTTCGGCTTGATCGCTGACGAATGCGTCGGCCACGGCGAACTGAGTGCTACCTGCGGAAACCGCCAG
TGCAATGGCGCTCCACTTCATCACTTTCATTGTGATTGCTCCTTTGGTTTTGAAATTATTTCTGCCATCACA
GTGCCGCAGTGA
Translation:
MPGLADAERQVLGRTGLDHVLGFEVGLVVLAVLAVAVVLIADVVVRHLGAIDVLAIDIADHESQAGNAIGGE
VQVVAGLPGFLAGAVEVGVLHGVGEENRVTAAAGTVLAEADIIKRLIAMDLLVGQGESVRIQSVGCRQGPSG
VADVAGLGLAFIVCAVDVEIEAQRLVGCQWDGVVAVQVILTIDVFEFSTVQGGAEVIGDCVAAPNEIGALGG
LACIGCVEFAARLGGGALLAFGEVARFEIEPFEFAALQLEAGRGLREQAAAAGGEDRSGRLHLAPLQHGLGD
AYLHGATGAAVVVTGRAVVHHWQVAGTALVGGAVELQTEVAEGIDAEADGALGEAGFIGGEEALGPVDAVPA
AALAVTVEIVVAEQQVEAAVFDEPLRFGLIADECVGHGELSATCGNRQCNGAPLHHFHCDCSFGFEIISAIT
VPQ*
AnnotationID:5583GeneID:5581
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 15:03:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15444




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28299




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48583How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 346434Stop: 347741

          
Length: 1308


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCCAGGCCTGGCGGATGCGGAACGACAGGTCCTTGGCCGGACCGGACTGGACCACGTACTTGGCTTCGAG 
GTTGGTCTCGTGGTGCTTGCCGTCCTCGCCGTAGCCGTAGTTCTTATAGCCGACGTTGTTGTCAGACATCTT 
GGTGCCATCGATGTCCTTGCCATTGATATAGCGGACCATGAAAGTCAGGCCGGGAACGCCATAGGAGGCGAG 
GTTCAGGTCGTAGCGGGCCTGCCAGGATTTCTCGCCGGGGCCGTTGAAGTCGGAGTACTGCACGGAGTTGGC 
GAGGAAAATCGAGTCACCGCCGCCGCCGGAACCGTTCTCGCCGAAGCCGATATAATCAAACGGCTGATCGCC 
ATGGACCTTCTGGTAGGCCAAGGTGAAAGTGTGCGCATCCAGAGTGTAGGCTGCCGCCAGGGACCAAGTGGT 
GTTGCTGATGTCGCCGGCCTTGGCCTTGCCTTCATCGTTTGTGCGGTAGATGTTGAAATCGAAGCCCAGCGA 
TTGGTCGGATGCCAGTGGGATGGTGTAGTTGCTGTTCAGGTAATACTGACGATAGATGTCTTCGAGTTCAGC 
ACCGTACAGGGAGGCGCTGAGGTTATCGGTGATTGCGTAGCGGCCCCCAATGAAATCGGCGCTCTTGGCGGT 
CTCGCCTGCATAGGTTGCGTAGAGTTCGCCGCGCGACTTGGTGGTGGTGCCCTGCTTGCCTTCGGTGAAGTG 
GCCCGCTTCGAGATCGAGCCCTTCGAGTTCGCTGCTCTGCAGTTGGAAGCCGGTCGCGGTCTGCGGGAACAG 
GCGGCTGCCGCCGGCGGCGAAGACCGGAGCGGTCGGCTGCATCTCGCCCCACTTCAACATGGTCTTGGAGAT 
GCGTACCTTCACGGCGCCACCGGCGCGGCTGTAGTCGTCACGGGGCGTGCCGTCGTTCATCACTGGCAGGTT 
GCCGGTACCGCTCTTGTCGGAGGTGCCGTCGAGCTTCAGACCGAGGTAGCCGAAGGCATCGACGCCGAAGCC 
GACGGTGCCTTGGGTGAAGCCGGATTCATAGGTGGTGAGGAAGCCTTGGGTCCAGTCGACGCGGTCCCCGCT 
GCCGCTCTTGCCGTCACGGTTGAAATAGTAGTTGCGGAGCAGCAGGTCGAGGCTGCTGTCTTCGATGAACCC 
CTTCGCTTCGGCTTGATCGCTGACGAATGCGTCGGCCACGGCGAACTGAGTGCTACCTGCGGAAACCGCCAG 
TGCAATGGCGCTCCACTTCATCACTTTCATTGTGATTGCTCCTTTGGTTTTGAAATTATTTCTGCCATCACA 
GTGCCGCAGTGA