ViewGene
Locus Name:
GeneID:
Location:

GeneID:5575
TrivialName: PA14_52170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52170
PAO1 Ortholog Locus:
Sequence Length:2295
Protein Length:764
Start: 4626240
Stop: 4628534
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA17104.1| (U00011) p1177c; B1177_F1_12 [Mycobacterium leprae]
Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 5/208 (2%)
Sequence:
GTGGCCTGTTTCCGCCTCGCCTCAAGGCGTACGGTTGCGCCGCGCCTCGATGATGTTGGGCAGTTGCGAAAC
GCGCGCCAGCAGGCGTCCAAGAGCGTCCAGACCGGGAATCTCGATGGTCAGTTGCATGGTCGCGGTGTTGTC
TTCCTTGTTCGAACGGGTATTCACCGCCAGAACGTTGATCCGCTCATTGAGCAGCACCTGGGACACGTCGCG
CAACAGGCCGGAACGATCATAGGCACGGATCGCGATATCCACCGGATAGGTGCGAACCGGCTCCGGCCCCCA
ACTGACCTGGATCATCCGCTCCGGTTCGCGTCCCGCCAGTTGCAGCGCGGTGGCGCAATCCTGGCGGTGGAT
GGTGACCCCACGGCCCAGCGTGATGTAGCCGACGATGGGATCTCCCGGCAGCGGCTGGCAGCAGCCGGCCAT
CTGCGTCAGGAGGTTGCCGACGCCCTGGATCTGCACGTCGCCGCGCTTGCCGTGGCCGATCTTGCTCGGCTT
GCGCGGGATCAGTTCGAGTTGCTCGCTGTCGCGGTCCGGCTCGACCAGTTGCTGGGCATAGTTGACCAGGTG
CGCCAAGCGCAGGTCGCCGGCGCCGAGAGCGGCGAACATATCCTCGGCGGTACGCACGTTGGCCTTCTCCGC
CAGCCGGTCGAAATCCACCGGCGGCAGCGCCAGGCGCGACAGCTCGCGTTCGATCAGGGCCTTGCCGGCAGC
GACGTTCTGGTCCCGCGCCTGCAGCTTGAACCAGTGGACGATCTTCGCCCGCGCCCGGGAGGTGGTGACATA
GCCCAGGTTGCTGTTCAGCCAGTCACGGCTCGGACCGCTGTGCTTGCCGGTGATGATCTCGACCTGCTCGCC
GGTCTGCAGGCTGTAGTTCAGCGGCACGATGCGTCCGTTGATCTTCGCCCCGCGGCAGTTGTGCCCGACTTC
AGTGTGGACCCGATAGGCGAAATCCAGCGGGGTCGCGCCCTTGGGCAGGTCGATGGCGTGGCCGTCGGGAGT
GAAGACGTAGACCCTGTCCGGCTCGATATCGACCCGCAGTTGCTCCGCCAGGCCACCGATGTCGCCCAGTTC
CTCGTGCCATTCGAGCACCTGGCGCAGCCAGGAGATCTTTTCCTCGTAATGGTTGGAGCTGGCCTTGACGTC
GGTCCCCTTGTAGCGCCAGTGCGCGCAGACCCCGAGCTCCGCCTCTTCGTGCATGGAGTGGGTACGGATCTG
TACTTCCAGCACCTTCCCCTCGGGGCCGATCACTGCGGTATGCAGCGAGCGATAGCCGTTTTCCTTGGGGTT
GGCGATGTAGTCGTCGAACTCCTTGGGAATGTGCCGCCAGAGGGTATGCACGATGCCCAGCGCGGTGTAGCA
GTCGCGCATCTCCGGAACGAGCACGCGCACGGCGCGAACGTCGTAGATCTGGCTGAAGTCCAGGCCCTTGCG
CTGCATCTTGCGCCAGATCGAATAGATGTGTTTCGCCCGCCCGCTGAGATCGGCCTGTACGCCGGTGGCCGC
GAGAGCTTCCTTCAACTGGCTCATCACGTTGGCGATGTACTGCTCGCGATCCAGCCGGCGCTCGTGCAGCAG
CTTGGCGATCTGCTTGTACTGGTCGGGCTCGAGGTAACGGAAGGACAGGTCCTCCAGCTCCCACTTGATATG
CCCGATGCCCAGGCGGTGGGCCAGCGGCGCGTAGATATCGAAGACTTCCCGGGCGACGCGGTGGCGCTTTTC
CTCGTCGGCATTCTTCACCGCGCGAATGGCGCAGGTGCGCTCGGCCAGCTTGATCAGAGCGACGCGAACGTC
GTCGACCATCGCCACCAGCATCTTGCGCAGGTTCTCCACCTGCGCCTGGGTACCCAGCACCATGGAATGGCG
CGGATTGAGGCTGGCGCTGATTGCGGCCATGCGCAGCACGCCCTCGATCAGCTTGGCCACCACCGGCCCGAA
ATGCTTGTTGACCGCTTCCAGGGTGATCTTGCCTTCCCGCACGCCTCGATAGATGACCGCGGCGACCAGGGA
CTCCTGATCCAGCTTGAGGTCCGCGAGGATCTCGGCGATTTCCAGTCCGGTCTGGAAGCTGGACGTGCCTTC
TGCCCAGGAGTTCTGTGCGGCGATCGCTCGCTGCTCGGATTCGCGAGCGAACTCGCAAGCCTCCAGCAAGCC
CTGACGATCGAGCCCGGGGACGAGGTTCTGGACGTGGTCCAGCCAGGCCTCGAGGTTGATACTGCCGTCGGT
GTTGACCGGCTGGTGCGCTCTCACCTGTACCATCTTGCCTACCCTTTACCACGGTGCGCGTAG
Translation:
MACFRLASRRTVAPRLDDVGQLRNARQQASKSVQTGNLDGQLHGRGVVFLVRTGIHRQNVDPLIEQHLGHVA
QQAGTIIGTDRDIHRIGANRLRPPTDLDHPLRFASRQLQRGGAILAVDGDPTAQRDVADDGISRQRLAAAGH
LRQEVADALDLHVAALAVADLARLARDQFELLAVAVRLDQLLGIVDQVRQAQVAGAESGEHILGGTHVGLLR
QPVEIHRRQRQARQLAFDQGLAGSDVLVPRLQLEPVDDLRPRPGGGDIAQVAVQPVTARTAVLAGDDLDLLA
GLQAVVQRHDASVDLRPAAVVPDFSVDPIGEIQRGRALGQVDGVAVGSEDVDPVRLDIDPQLLRQATDVAQF
LVPFEHLAQPGDLFLVMVGAGLDVGPLVAPVRADPELRLFVHGVGTDLYFQHLPLGADHCGMQRAIAVFLGV
GDVVVELLGNVPPEGMHDAQRGVAVAHLRNEHAHGANVVDLAEVQALALHLAPDRIDVFRPPAEIGLYAGGR
ESFLQLAHHVGDVLLAIQPALVQQLGDLLVLVGLEVTEGQVLQLPLDMPDAQAVGQRRVDIEDFPGDAVALF
LVGILHRANGAGALGQLDQSDANVVDHRHQHLAQVLHLRLGTQHHGMARIEAGADCGHAQHALDQLGHHRPE
MLVDRFQGDLAFPHASIDDRGDQGLLIQLEVREDLGDFQSGLEAGRAFCPGVLCGDRSLLGFASELASLQQA
LTIEPGDEVLDVVQPGLEVDTAVGVDRLVRSHLYHLAYPLPRCA*
AnnotationID:5577GeneID:5575
AnnotatorUID: danlee
Modification Date/Time: 2004-05-10 14:02:20
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15441




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28287




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48577How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 327667Stop: 325373

          
Length: 2295


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold5_revised_gene5930 related to: gi|141592|sp|P17581|YZST_ECOLI VERY HYPOTHETICAL 77.2 KD PROTEIN IN SPOT 3'REGION pir||Q3ECS7 hypothetical 77K protein (spoT 3' region) - Escherichia coliHomolog Bit Score 501.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5930 related to: gi|141592|sp|P17581|YZST_ECOLI VERY HYPOTHETICAL 77.2 KD PROTEIN IN SPOT 3'REGION pir||Q3ECS7 hypothetical 77K protein (spoT 3' region) - Escherichia coli (BLASTP 501), psyr_15may02_Scaffold5_revised_gene5929 (BLASTP 106)

          
GC ORF Sequence

           
GTGGCCTGTTTCCGCCTCGCCTCAAGGCGTACGGTTGCGCCGCGCCTCGATGATGTTGGGCAGTTGCGAAAC 
GCGCGCCAGCAGGCGTCCAAGAGCGTCCAGACCGGGAATCTCGATGGTCAGTTGCATGGTCGCGGTGTTGTC 
TTCCTTGTTCGAACGGGTATTCACCGCCAGAACGTTGATCCGCTCATTGAGCAGCACCTGGGACACGTCGCG 
CAACAGGCCGGAACGATCATAGGCACGGATCGCGATATCCACCGGATAGGTGCGAACCGGCTCCGGCCCCCA 
ACTGACCTGGATCATCCGCTCCGGTTCGCGTCCCGCCAGTTGCAGCGCGGTGGCGCAATCCTGGCGGTGGAT 
GGTGACCCCACGGCCCAGCGTGATGTAGCCGACGATGGGATCTCCCGGCAGCGGCTGGCAGCAGCCGGCCAT 
CTGCGTCAGGAGGTTGCCGACGCCCTGGATCTGCACGTCGCCGCGCTTGCCGTGGCCGATCTTGCTCGGCTT 
GCGCGGGATCAGTTCGAGTTGCTCGCTGTCGCGGTCCGGCTCGACCAGTTGCTGGGCATAGTTGACCAGGTG 
CGCCAAGCGCAGGTCGCCGGCGCCGAGAGCGGCGAACATATCCTCGGCGGTACGCACGTTGGCCTTCTCCGC 
CAGCCGGTCGAAATCCACCGGCGGCAGCGCCAGGCGCGACAGCTCGCGTTCGATCAGGGCCTTGCCGGCAGC 
GACGTTCTGGTCCCGCGCCTGCAGCTTGAACCAGTGGACGATCTTCGCCCGCGCCCGGGAGGTGGTGACATA 
GCCCAGGTTGCTGTTCAGCCAGTCACGGCTCGGACCGCTGTGCTTGCCGGTGATGATCTCGACCTGCTCGCC 
GGTCTGCAGGCTGTAGTTCAGCGGCACGATGCGTCCGTTGATCTTCGCCCCGCGGCAGTTGTGCCCGACTTC 
AGTGTGGACCCGATAGGCGAAATCCAGCGGGGTCGCGCCCTTGGGCAGGTCGATGGCGTGGCCGTCGGGAGT 
GAAGACGTAGACCCTGTCCGGCTCGATATCGACCCGCAGTTGCTCCGCCAGGCCACCGATGTCGCCCAGTTC 
CTCGTGCCATTCGAGCACCTGGCGCAGCCAGGAGATCTTTTCCTCGTAATGGTTGGAGCTGGCCTTGACGTC 
GGTCCCCTTGTAGCGCCAGTGCGCGCAGACCCCGAGCTCCGCCTCTTCGTGCATGGAGTGGGTACGGATCTG 
TACTTCCAGCACCTTCCCCTCGGGGCCGATCACTGCGGTATGCAGCGAGCGATAGCCGTTTTCCTTGGGGTT 
GGCGATGTAGTCGTCGAACTCCTTGGGAATGTGCCGCCAGAGGGTATGCACGATGCCCAGCGCGGTGTAGCA 
GTCGCGCATCTCCGGAACGAGCACGCGCACGGCGCGAACGTCGTAGATCTGGCTGAAGTCCAGGCCCTTGCG 
CTGCATCTTGCGCCAGATCGAATAGATGTGTTTCGCCCGCCCGCTGAGATCGGCCTGTACGCCGGTGGCCGC 
GAGAGCTTCCTTCAACTGGCTCATCACGTTGGCGATGTACTGCTCGCGATCCAGCCGGCGCTCGTGCAGCAG 
CTTGGCGATCTGCTTGTACTGGTCGGGCTCGAGGTAACGGAAGGACAGGTCCTCCAGCTCCCACTTGATATG 
CCCGATGCCCAGGCGGTGGGCCAGCGGCGCGTAGATATCGAAGACTTCCCGGGCGACGCGGTGGCGCTTTTC 
CTCGTCGGCATTCTTCACCGCGCGAATGGCGCAGGTGCGCTCGGCCAGCTTGATCAGAGCGACGCGAACGTC 
GTCGACCATCGCCACCAGCATCTTGCGCAGGTTCTCCACCTGCGCCTGGGTACCCAGCACCATGGAATGGCG 
CGGATTGAGGCTGGCGCTGATTGCGGCCATGCGCAGCACGCCCTCGATCAGCTTGGCCACCACCGGCCCGAA 
ATGCTTGTTGACCGCTTCCAGGGTGATCTTGCCTTCCCGCACGCCTCGATAGATGACCGCGGCGACCAGGGA 
CTCCTGATCCAGCTTGAGGTCCGCGAGGATCTCGGCGATTTCCAGTCCGGTCTGGAAGCTGGACGTGCCTTC 
TGCCCAGGAGTTCTGTGCGGCGATCGCTCGCTGCTCGGATTCGCGAGCGAACTCGCAAGCCTCCAGCAAGCC 
CTGACGATCGAGCCCGGGGACGAGGTTCTGGACGTGGTCCAGCCAGGCCTCGAGGTTGATACTGCCGTCGGT 
GTTGACCGGCTGGTGCGCTCTCACCTGTACCATCTTGCCTACCCTTTACCACGGTGCGCGTAG