ViewGene
Locus Name:
GeneID:
Location:

GeneID:5568
TrivialName: PA14_52590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52590
PAO1 Ortholog Locus:
Sequence Length:2826
Protein Length:941
Start: 4662143
Stop: 4664968
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG57802.1|AE005498_3 (AE005498) Z4000 gene product [Escherichia coli O157:H7 EDL933]
Identities = 50/98 (51%), Positives = 61/98 (62%)
Sequence:
ATGGCATCAGAGCCCTTGCTCGACGAAGCGCTGGGCCAGGGCCAGGGCCTCGTCCAATTTCGCTGCATTGGT
GCCGCCGCCCTGGGCCATATCCGGGCGTCCGCCACCTTTGCCACCAACTGCCGCCGCGGCTTGCTTCATAAG
CTCGCCGGCCTTCAGTTGACCGGTCAGGTCCTGGGTCACGCCTGCGACCAGTACGACCTTCCCGTCCAGCTC
GCCGCCGAGCAGGATCACTGCGCGGCCGAGCTTGTTCTTCAACTGGTCGACCAGCGCCAGCAGCGCCTTGCC
GTCCAGACCATCGAGGCGCGCGGCGAGTACCTTCGCGCCCTTGATTTCCACCGCCGCCGCCGAAAGGTCGTC
GCCGGCCGCGCTGGCAGCCTTGGCCTTGAGCTGTTCCAGCTCCTTCTCCAGCGAGCGGTTGCGCTCCAGCAG
GGCGCCGAGTTTGTCCAGCAGGTTGTCGCGGCTGCCCTTGACCAGGCTGGCGGCTTCCTTGAGCTGCTCCTC
GGCACCGTTCAGGTAGGCCAGCGCCGCCGCGCCGGTGACCGCCTCGATACGGCGTACGCCGGCAGCCACGCC
ACCCTCGCTGGTGATCTTGAACAGGCCGATGTCGCCGGTGCGGGATACGTGGGTGCCACCGCACAGCTCGAC
GGAGAAATCGCCGCCCATGCTCAGCACGCGCACCTGGTCGCCGTACTTCTCGCCGAACAGCGCCATGGCGCC
CTTGGCCTTGGCGGTGTCGATATCGGTTTCCTCGGTCTCGACCTCGGTGTTGCGACGGATTTCGGCGTTGAC
GATATCTTCCAGGGCCTTCAGTTGTTCCGCCTTGATCGCCTCGAAGTGGCTGAAGTCGAAACGCAGGCGCTG
GCTGTCCACCAGCGAGCCCTTCTGTTGTACGTGGTCGCCCAGTACCTGGCGCAGCGCGGCATGCAGCAGGTG
GGTCGCGGAGTGGTTGAGCGCGGTGGCCTGGCGTACCGAGGCGTCGACCTCGGCCTTGACCGCGGCGCCAAC
GCTCAGGTTGCCCCGGGCGACCACGCCGTGGTGCAGGTGCGCGCCGCCGGCCTTGGTGGTATCGCGCACGTC
GAAGCGCACGCCAGCCGCCTCGAGGTAGCCACTGTCGCCGACCTGGCCGCCGGACTCGGCGTAGAACGGCGT
CTGGTCGAGGACCACGACGCCCTCCTCGCCCTCCTCCAGGCGCTCGACGGCCTGGCCGTCCCTGAACAGCGC
GACGATCTGTCCAGCGCCGGAGACACCCTGGTAGCCGAGGAAGCGGGTCTCGCCGTCGACCTTGACCAGGCT
GTTGTAGTCCATGCCAAAGGCGCTGGAAGCGCGGGCGCGCTCGCGCTGGGCCTCCATCTCGCGCTCGAAGCC
GTCCTCGTCGATGGTCAGCTCGCGCTCGCGGGCGATGTCATTGGTCAGGTCGACCGGGAAGCCATAGGTGTC
GTACAGCTTGAACACCACGTTGCCGGGAATCACGCTGCCCTGCAGTTCGGCAAGGTCCTGTTCGAGGATCTT
CAGGCCTTGCTCCAGGGTTTTGGCGAACTGCTCTTCCTCGGTCTTCAGCACGCGCTCGATGTGTGCCTGCTG
TTGCTTCAGCTCGGGGAAGGCATCGCCCATCTCGGCGACCAGCGCTGCGACGATCTTGTGGAAGAAGGTGCC
CCTGGCGCCCAGCTTGTTGCCGTGGCGGCAGGCGCGGCGGATGATCCGCCGCAAGACGTAGCCGCGACCTTC
GTTGGACGGCAGCACGCCGTCGGCGATCAGGAAGCTGCAGGAACGGATGTGGTCGGCTACCACCTTCAGCGA
CGGCGCGTCGTCGTTGGCGCAGCCGATGGCCTCGGCGGAGGCTTTCAGCAGGTTCTGGAACAGGTCGATCTC
ATAGTTCGAGTGCACGTGCTGGAGTACCGCGCTGACGCGCTCCAGGCCCATGCCGGTGTCCACGCTCGGCGC
CGGCAGCGGGTGCATGACGCCGTCCGCAGTGCGGTTGAACTGCATGAACACGTTGTTCCAGATCTCGATGTA
GCGGTCGCCGTCCTCTTCCGGCGAACCGGGCGGGCCGCCCCAGATCTCCGGACCATGGTCGAAGAAGATCTC
GGTGCAGGGACCGCAAGGTCCGGTATCGCCCATCGCCCAGAAGTTGTCGGACGCATAGGGCGCACCCTTGTT
GTCGCCGATCCGCACCATACGCTCGGCGGGCACGCCGACTTCCTTGGTCCAGATGTCGTAGGCCTCGTCGTC
GGTGGCGTAGACGGTGACCCAGAGCTTTTCCTTGGGCAGGTTCAGCCATTTCTCGCCGGTGAGGAACTCCCA
GGCGTAATGGATGGCGTCGCGCTTGAAATAGTCGCCGAAGCTGAAGTTACCCAGCATTTCGAAGAAGGTGTG
GTGCCGCGCGGTGTAGCCGACGTTTTCCAGGTCGTTGTGCTTGCCGCCGGCGCGCACGCATTTCTGGCTGGT
GGTCGCACGGGTGTAGGCGCGCTTTTCCAGGCCGAGGAAGCAGTCCTTGAACTGGTTCATGCCCGCGTTGGT
GAACAGCAGGGTCGGATCGTTCGCCGGGATCAGCGAACTGGAAGCGACACGGGTGTGTCCCTTCTCTTCGAA
GAAGCGGAGGAAGGCTTCACGGATTTCAGCGCTTTTCATAGGTTCTTCCACGGAAAATTGGCGGCCACGAAT
CGCCGGCAAAGGGCCGCATTATATCGGCCCTTGGGCAAGGTTGTAGTGTATTTGCGCGATAGTTATTGCCTA
TTGCCGACCTTTTCGCTTATGAGCGACGAAAGGCCGCGAAGGCATCCAGTACTTGTCCTATGGACTCGGCGG
AAACGTCCAGGTGGGTGA
Translation:
MASEPLLDEALGQGQGLVQFRCIGAAALGHIRASATFATNCRRGLLHKLAGLQLTGQVLGHACDQYDLPVQL
AAEQDHCAAELVLQLVDQRQQRLAVQTIEARGEYLRALDFHRRRRKVVAGRAGSLGLELFQLLLQRAVALQQ
GAEFVQQVVAAALDQAGGFLELLLGTVQVGQRRRAGDRLDTAYAGSHATLAGDLEQADVAGAGYVGATAQLD
GEIAAHAQHAHLVAVLLAEQRHGALGLGGVDIGFLGLDLGVATDFGVDDIFQGLQLFRLDRLEVAEVETQAL
AVHQRALLLYVVAQYLAQRGMQQVGRGVVERGGLAYRGVDLGLDRGANAQVAPGDHAVVQVRAAGLGGIAHV
EAHASRLEVATVADLAAGLGVERRLVEDHDALLALLQALDGLAVPEQRDDLSSAGDTLVAEEAGLAVDLDQA
VVVHAKGAGSAGALALGLHLALEAVLVDGQLALAGDVIGQVDREAIGVVQLEHHVAGNHAALQFGKVLFEDL
QALLQGFGELLFLGLQHALDVCLLLLQLGEGIAHLGDQRCDDLVEEGAPGAQLVAVAAGAADDPPQDVAATF
VGRQHAVGDQEAAGTDVVGYHLQRRRVVVGAADGLGGGFQQVLEQVDLIVRVHVLEYRADALQAHAGVHARR
RQRVHDAVRSAVELHEHVVPDLDVAVAVLFRRTGRAAPDLRTMVEEDLGAGTARSGIAHRPEVVGRIGRTLV
VADPHHTLGGHADFLGPDVVGLVVGGVDGDPELFLGQVQPFLAGEELPGVMDGVALEIVAEAEVTQHFEEGV
VPRGVADVFQVVVLAAGAHAFLAGGRTGVGALFQAEEAVLELVHARVGEQQGRIVRRDQRTGSDTGVSLLFE
EAEEGFTDFSAFHRFFHGKLAATNRRQRAALYRPLGKVVVYLRDSYCLLPTFSLMSDERPRRHPVLVLWTRR
KRPGG*
AnnotationID:5570GeneID:5568
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 12:12:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11119




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28273




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48570How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 291764Stop: 288939

          
Length: 2826


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold8_revised_gene7612 related to: gi|15803212|ref|NP_289244.1| (NC_002655) Z4000 gene product [Escherichia coli O157:H7 EDL933] gb|AAG57802.1|AE005498_3 (AE005498) Z4000 gene product [Escherichia coli O157:H7 EDL933]Homolog Bit Score 778.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7612 related to: gi|15803212|ref|NP_289244.1| (NC_002655) Z4000 gene product [Escherichia coli O157:H7 EDL933] gb|AAG57802.1|AE005498_3 (AE005498) Z4000 gene product [Escherichia coli O157:H7 EDL933] (BLASTP 778)

          
GC ORF Sequence

           
ATGGCATCAGAGCCCTTGCTCGACGAAGCGCTGGGCCAGGGCCAGGGCCTCGTCCAATTTCGCTGCATTGGT 
GCCGCCGCCCTGGGCCATATCCGGGCGTCCGCCACCTTTGCCACCAACTGCCGCCGCGGCTTGCTTCATAAG 
CTCGCCGGCCTTCAGTTGACCGGTCAGGTCCTGGGTCACGCCTGCGACCAGTACGACCTTCCCGTCCAGCTC 
GCCGCCGAGCAGGATCACTGCGCGGCCGAGCTTGTTCTTCAACTGGTCGACCAGCGCCAGCAGCGCCTTGCC 
GTCCAGACCATCGAGGCGCGCGGCGAGTACCTTCGCGCCCTTGATTTCCACCGCCGCCGCCGAAAGGTCGTC 
GCCGGCCGCGCTGGCAGCCTTGGCCTTGAGCTGTTCCAGCTCCTTCTCCAGCGAGCGGTTGCGCTCCAGCAG 
GGCGCCGAGTTTGTCCAGCAGGTTGTCGCGGCTGCCCTTGACCAGGCTGGCGGCTTCCTTGAGCTGCTCCTC 
GGCACCGTTCAGGTAGGCCAGCGCCGCCGCGCCGGTGACCGCCTCGATACGGCGTACGCCGGCAGCCACGCC 
ACCCTCGCTGGTGATCTTGAACAGGCCGATGTCGCCGGTGCGGGATACGTGGGTGCCACCGCACAGCTCGAC 
GGAGAAATCGCCGCCCATGCTCAGCACGCGCACCTGGTCGCCGTACTTCTCGCCGAACAGCGCCATGGCGCC 
CTTGGCCTTGGCGGTGTCGATATCGGTTTCCTCGGTCTCGACCTCGGTGTTGCGACGGATTTCGGCGTTGAC 
GATATCTTCCAGGGCCTTCAGTTGTTCCGCCTTGATCGCCTCGAAGTGGCTGAAGTCGAAACGCAGGCGCTG 
GCTGTCCACCAGCGAGCCCTTCTGTTGTACGTGGTCGCCCAGTACCTGGCGCAGCGCGGCATGCAGCAGGTG 
GGTCGCGGAGTGGTTGAGCGCGGTGGCCTGGCGTACCGAGGCGTCGACCTCGGCCTTGACCGCGGCGCCAAC 
GCTCAGGTTGCCCCGGGCGACCACGCCGTGGTGCAGGTGCGCGCCGCCGGCCTTGGTGGTATCGCGCACGTC 
GAAGCGCACGCCAGCCGCCTCGAGGTAGCCACTGTCGCCGACCTGGCCGCCGGACTCGGCGTAGAACGGCGT 
CTGGTCGAGGACCACGACGCCCTCCTCGCCCTCCTCCAGGCGCTCGACGGCCTGGCCGTCCCTGAACAGCGC 
GACGATCTGTCCAGCGCCGGAGACACCCTGGTAGCCGAGGAAGCGGGTCTCGCCGTCGACCTTGACCAGGCT 
GTTGTAGTCCATGCCAAAGGCGCTGGAAGCGCGGGCGCGCTCGCGCTGGGCCTCCATCTCGCGCTCGAAGCC 
GTCCTCGTCGATGGTCAGCTCGCGCTCGCGGGCGATGTCATTGGTCAGGTCGACCGGGAAGCCATAGGTGTC 
GTACAGCTTGAACACCACGTTGCCGGGAATCACGCTGCCCTGCAGTTCGGCAAGGTCCTGTTCGAGGATCTT 
CAGGCCTTGCTCCAGGGTTTTGGCGAACTGCTCTTCCTCGGTCTTCAGCACGCGCTCGATGTGTGCCTGCTG 
TTGCTTCAGCTCGGGGAAGGCATCGCCCATCTCGGCGACCAGCGCTGCGACGATCTTGTGGAAGAAGGTGCC 
CCTGGCGCCCAGCTTGTTGCCGTGGCGGCAGGCGCGGCGGATGATCCGCCGCAAGACGTAGCCGCGACCTTC 
GTTGGACGGCAGCACGCCGTCGGCGATCAGGAAGCTGCAGGAACGGATGTGGTCGGCTACCACCTTCAGCGA 
CGGCGCGTCGTCGTTGGCGCAGCCGATGGCCTCGGCGGAGGCTTTCAGCAGGTTCTGGAACAGGTCGATCTC 
ATAGTTCGAGTGCACGTGCTGGAGTACCGCGCTGACGCGCTCCAGGCCCATGCCGGTGTCCACGCTCGGCGC 
CGGCAGCGGGTGCATGACGCCGTCCGCAGTGCGGTTGAACTGCATGAACACGTTGTTCCAGATCTCGATGTA 
GCGGTCGCCGTCCTCTTCCGGCGAACCGGGCGGGCCGCCCCAGATCTCCGGACCATGGTCGAAGAAGATCTC 
GGTGCAGGGACCGCAAGGTCCGGTATCGCCCATCGCCCAGAAGTTGTCGGACGCATAGGGCGCACCCTTGTT 
GTCGCCGATCCGCACCATACGCTCGGCGGGCACGCCGACTTCCTTGGTCCAGATGTCGTAGGCCTCGTCGTC 
GGTGGCGTAGACGGTGACCCAGAGCTTTTCCTTGGGCAGGTTCAGCCATTTCTCGCCGGTGAGGAACTCCCA 
GGCGTAATGGATGGCGTCGCGCTTGAAATAGTCGCCGAAGCTGAAGTTACCCAGCATTTCGAAGAAGGTGTG 
GTGCCGCGCGGTGTAGCCGACGTTTTCCAGGTCGTTGTGCTTGCCGCCGGCGCGCACGCATTTCTGGCTGGT 
GGTCGCACGGGTGTAGGCGCGCTTTTCCAGGCCGAGGAAGCAGTCCTTGAACTGGTTCATGCCCGCGTTGGT 
GAACAGCAGGGTCGGATCGTTCGCCGGGATCAGCGAACTGGAAGCGACACGGGTGTGTCCCTTCTCTTCGAA 
GAAGCGGAGGAAGGCTTCACGGATTTCAGCGCTTTTCATAGGTTCTTCCACGGAAAATTGGCGGCCACGAAT 
CGCCGGCAAAGGGCCGCATTATATCGGCCCTTGGGCAAGGTTGTAGTGTATTTGCGCGATAGTTATTGCCTA 
TTGCCGACCTTTTCGCTTATGAGCGACGAAAGGCCGCGAAGGCATCCAGTACTTGTCCTATGGACTCGGCGG 
AAACGTCCAGGTGGGTGA