ViewGene

Locus Name:
GeneID:
Location:

GeneID:5567
TrivialName: PA14_52620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52620
PAO1 Ortholog Locus:
Sequence Length:2211
Protein Length:736
Start: 4664931
Stop: 4667141
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15]
Identities = 95/329 (28%), Positives = 116/329 (35%), Gaps = 50/329 (15%)
Sequence:
TTGTCCTATGGACTCGGCGGAAACGTCCAGGTGGGTGACCAGGCGCAAACGCGCCGCCGCGCTGATCCGCAC
CTCGCGCTCGGCGAGGAAGTCGCGCAGCGCGACCGCCCGCTCGCCGACATCGACGTAGACCATGTTGGTCTG
CACCGGCTCCACCGCATAGCCCAGTTCGCGCAGCCCGTCGCCCAGGCGCGCGGCGTTGGCGTGGTCGTCGGC
CAGGCGTGCCACCTGGTGGTCGAGGGCGTACAGGCCGGCAGCCGCCAGCAGGCCGGCCTGGCGCATCCCGCC
GCCGACCATCTTGCGCCAGCGACGGGCCTTGCCGATCAGTTCGACGCTGCCGCAAAGCACCGAGCCCACCGG
CGCACCGAGGCCCTTGGACAGGCACACCGACACCGAGTCGAAGTGCCGGGTGATCTCGCTGGCGTCTACGCC
CAGCTTCACCGCCGCGTTGTACAGGCGCGCGCCATCCAGGTGCAGGGCCAGGCCACGCGCGCGAGTGAAGGC
GCGCGCCGCGGCCAGGTAGTCGAGCGGCAGCACCTTGCCCTGCATGGTGTTTTCCAGGGCCAGCAGGCGGGT
CCTGGCGAAATGGAAGTCGTCGGCCTTGATCGCCGCCGCGACCTTGTCCAGGTCGAGCGATCCGTCGGCCTC
GCCGTCGATCGGCTGCGGCTGGATCGAGCCCAGCACCGCGGCACCGCCGCCCTCGTATTTGTAGGTATGCGC
CTGCTGGCCGACGATGTATTCGTCGCCGCGCTCGCAGTGGGCCATCAATCCGAGCAGGTTGCTCATGGTCCC
GGTCGGTACGAAGAGCGCCGCGGCGAAGCCCAGGCGCGCCGCCAGTTCGGCCTCCAGGCGGTTGACCGTGGG
GTCCTCGCCATAGACGTCGTCGCCCAGTTCGGCCGCGGCCATGGCTTCGCGCATGCCGGCGGTGGGCTGGGT
GACGGTGTCGCTGCGCAGGTCGATGACAGGCACGGAGGGCTCCTCGGTTCGGCGGAAAAGCCCGATCCTACG
GCGCTCTACCGACAGCCACAAGGGAAGTCGGGAAATCTTCCCGGCCGCAACGGAAACGGAGCGCCGAAGCGC
TCCGTCATGATCGAGAGGGAAGGCCGATACGTCTCAGAGCTTGGCCGGCACCACCAGGATTCCGGCGCGCAA
GCCGTTCTTCACCCGCGGATTGGGGAAGATGATGCGCGCGCCGACCTCCTCCACCACCCAGCGCGTGCCGCC
GATATCCTCGGCCAGCAGGTAGCCCGGCGAGAGTTCGGTGAAGTTGGCCACGTCGTCGTCGAGGTGCAGGCG
GAAGTGGTCGCTGTGCTTGATCACCTCGCGCGACACGCTGAACAGCTTGAGGCCATCGAGTCGGGAGCCGTC
CGGCTGTTCCTCGCTGCCGTCGATCAGCAGCTCCAGGCTCCGCTCCAGGCGCTCCAGGTTGACCTCCTGGTT
CTCTCCGAACGGACGTGCCTTGCCCAGTTCCAGGGTAAAGGCCTCGGCGCCGAGCTGGCCGTAGGTGTAGGC
GCTGAAGGTGATGCCCGGCTTGTTCTGCAACAGCACCGCCTCGATGCCGGCGTCGCGCAGGCGGGCCAGTTC
GCTGCGGGAATGCTCGCGGCCCTCGGCCCAGGGGTAGAGGGCGAACTGCTCGATCTTCGAGCCGCGGATCGC
GGTATGCAGGTCGTAGTGCAGGTGGACTCGCTCGGTCTTGCTGAAGAACACCTGGGCCAGGCGCTCCAGCTC
GGCGGCACGGAAGGCCTCGTTGCCGCTGCCCTCCTCGTGGCGACCGTTGAACAGGCGGTTCATGTCCTGTTC
GACGTAGCGCTCGCCGCGGCGGATGGCTTCTGGGTTGCCGAACAGGAAGAGGACCCTGGCGGCAGGCTTGAG
GGTGCCCGCGGCGACCTTGCGGATCAGCCGTTCGAGCAGTTCGATGGGCGCGGTCTCGTTGCCGTGGATACC
GGCCGAGAGCAACAGGTCGACGCCGTTGTCGCGGGCGCCGATCGGCGTGACTTCCAGCGCGCCCTCGGCCAG
CCAGTGCAGGCGGGTGCCGTCGGCGGTGAGCTGGATCTTCTCGGTCGGCTCGCGGCCGGCCAGGGTCAAGTC
GAGCAGTTTGCCGAGGGCGAGCATGGGATGTCCTCAGTCAGTGGGTGTGGTCGCAGCCGCAGTCGGGGCCGT
GCTCGTGGTCGTCGCCCTCTTCGATCGGCTCCATCTCCAGTTGCAGGCTGA
Translation:
MSYGLGGNVQVGDQAQTRRRADPHLALGEEVAQRDRPLADIDVDHVGLHRLHRIAQFAQPVAQARGVGVVVG
QACHLVVEGVQAGSRQQAGLAHPAADHLAPATGLADQFDAAAKHRAHRRTEALGQAHRHRVEVPGDLAGVYA
QLHRRVVQARAIQVQGQATRASEGARRGQVVERQHLALHGVFQGQQAGPGEMEVVGLDRRRDLVQVERSVGL
AVDRLRLDRAQHRGTAALVFVGMRLLADDVFVAALAVGHQSEQVAHGPGRYEERRGEAQARRQFGLQAVDRG
VLAIDVVAQFGRGHGFAHAGGGLGDGVAAQVDDRHGGLLGSAEKPDPTALYRQPQGKSGNLPGRNGNGAPKR
SVMIEREGRYVSELGRHHQDSGAQAVLHPRIGEDDARADLLHHPARAADILGQQVARREFGEVGHVVVEVQA
EVVAVLDHLARHAEQLEAIESGAVRLFLAAVDQQLQAPLQALQVDLLVLSERTCLAQFQGKGLGAELAVGVG
AEGDARLVLQQHRLDAGVAQAGQFAAGMLAALGPGVEGELLDLRAADRGMQVVVQVDSLGLAEEHLGQALQL
GGTEGLVAAALLVATVEQAVHVLFDVALAAADGFWVAEQEEDPGGRLEGARGDLADQPFEQFDGRGLVAVDT
GREQQVDAVVAGADRRDFQRALGQPVQAGAVGGELDLLGRLAAGQGQVEQFAEGEHGMSSVSGCGRSRSRGR
ARGRRPLRSAPSPVAG*
AnnotationID:5569GeneID:5567
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 12:12:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15435
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28271
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48569How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 288976Stop: 286766
Length: 2211
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGTCCTATGGACTCGGCGGAAACGTCCAGGTGGGTGACCAGGCGCAAACGCGCCGCCGCGCTGATCCGCAC
CTCGCGCTCGGCGAGGAAGTCGCGCAGCGCGACCGCCCGCTCGCCGACATCGACGTAGACCATGTTGGTCTG
CACCGGCTCCACCGCATAGCCCAGTTCGCGCAGCCCGTCGCCCAGGCGCGCGGCGTTGGCGTGGTCGTCGGC
CAGGCGTGCCACCTGGTGGTCGAGGGCGTACAGGCCGGCAGCCGCCAGCAGGCCGGCCTGGCGCATCCCGCC
GCCGACCATCTTGCGCCAGCGACGGGCCTTGCCGATCAGTTCGACGCTGCCGCAAAGCACCGAGCCCACCGG
CGCACCGAGGCCCTTGGACAGGCACACCGACACCGAGTCGAAGTGCCGGGTGATCTCGCTGGCGTCTACGCC
CAGCTTCACCGCCGCGTTGTACAGGCGCGCGCCATCCAGGTGCAGGGCCAGGCCACGCGCGCGAGTGAAGGC
GCGCGCCGCGGCCAGGTAGTCGAGCGGCAGCACCTTGCCCTGCATGGTGTTTTCCAGGGCCAGCAGGCGGGT
CCTGGCGAAATGGAAGTCGTCGGCCTTGATCGCCGCCGCGACCTTGTCCAGGTCGAGCGATCCGTCGGCCTC
GCCGTCGATCGGCTGCGGCTGGATCGAGCCCAGCACCGCGGCACCGCCGCCCTCGTATTTGTAGGTATGCGC
CTGCTGGCCGACGATGTATTCGTCGCCGCGCTCGCAGTGGGCCATCAATCCGAGCAGGTTGCTCATGGTCCC
GGTCGGTACGAAGAGCGCCGCGGCGAAGCCCAGGCGCGCCGCCAGTTCGGCCTCCAGGCGGTTGACCGTGGG
GTCCTCGCCATAGACGTCGTCGCCCAGTTCGGCCGCGGCCATGGCTTCGCGCATGCCGGCGGTGGGCTGGGT
GACGGTGTCGCTGCGCAGGTCGATGACAGGCACGGAGGGCTCCTCGGTTCGGCGGAAAAGCCCGATCCTACG
GCGCTCTACCGACAGCCACAAGGGAAGTCGGGAAATCTTCCCGGCCGCAACGGAAACGGAGCGCCGAAGCGC
TCCGTCATGATCGAGAGGGAAGGCCGATACGTCTCAGAGCTTGGCCGGCACCACCAGGATTCCGGCGCGCAA
GCCGTTCTTCACCCGCGGATTGGGGAAGATGATGCGCGCGCCGACCTCCTCCACCACCCAGCGCGTGCCGCC
GATATCCTCGGCCAGCAGGTAGCCCGGCGAGAGTTCGGTGAAGTTGGCCACGTCGTCGTCGAGGTGCAGGCG
GAAGTGGTCGCTGTGCTTGATCACCTCGCGCGACACGCTGAACAGCTTGAGGCCATCGAGTCGGGAGCCGTC
CGGCTGTTCCTCGCTGCCGTCGATCAGCAGCTCCAGGCTCCGCTCCAGGCGCTCCAGGTTGACCTCCTGGTT
CTCTCCGAACGGACGTGCCTTGCCCAGTTCCAGGGTAAAGGCCTCGGCGCCGAGCTGGCCGTAGGTGTAGGC
GCTGAAGGTGATGCCCGGCTTGTTCTGCAACAGCACCGCCTCGATGCCGGCGTCGCGCAGGCGGGCCAGTTC
GCTGCGGGAATGCTCGCGGCCCTCGGCCCAGGGGTAGAGGGCGAACTGCTCGATCTTCGAGCCGCGGATCGC
GGTATGCAGGTCGTAGTGCAGGTGGACTCGCTCGGTCTTGCTGAAGAACACCTGGGCCAGGCGCTCCAGCTC
GGCGGCACGGAAGGCCTCGTTGCCGCTGCCCTCCTCGTGGCGACCGTTGAACAGGCGGTTCATGTCCTGTTC
GACGTAGCGCTCGCCGCGGCGGATGGCTTCTGGGTTGCCGAACAGGAAGAGGACCCTGGCGGCAGGCTTGAG
GGTGCCCGCGGCGACCTTGCGGATCAGCCGTTCGAGCAGTTCGATGGGCGCGGTCTCGTTGCCGTGGATACC
GGCCGAGAGCAACAGGTCGACGCCGTTGTCGCGGGCGCCGATCGGCGTGACTTCCAGCGCGCCCTCGGCCAG
CCAGTGCAGGCGGGTGCCGTCGGCGGTGAGCTGGATCTTCTCGGTCGGCTCGCGGCCGGCCAGGGTCAAGTC
GAGCAGTTTGCCGAGGGCGAGCATGGGATGTCCTCAGTCAGTGGGTGTGGTCGCAGCCGCAGTCGGGGCCGT
GCTCGTGGTCGTCGCCCTCTTCGATCGGCTCCATCTCCAGTTGCAGGCTGA