ViewGene

Locus Name:
GeneID:
Location:

GeneID:5549
TrivialName: PA14_53460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53460
PAO1 Ortholog Locus:
Sequence Length:1386
Protein Length:461
Start: 4738676
Stop: 4740061
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 115/371 (30%), Positives = 128/371 (34%), Gaps = 41/371 (11%)
Sequence:
GTGGCCATACTCAACACCTGCGCCACCAACCGCCCTGGCAATCGCGCGCCTGGGTCCTTGACGAAAACGAGC
GGCACAGACAGCTCGGCCGCGAATTTCGCTGCGGCTGGTGTGCCCGGGAAGAAGAAGAGCAGACCAAGGAGC
AGTGATGCCCTCACGCAACATACTGGTGATCAACTGCGGCAGTTCGTCGATCAAGTTCGCCCTGGTCAACGA
GGCCCACTCCCTGTTTCCCCTGCACGGCCTCGCCGAGCGCCTGGGCAGCCGCGATGCGGTGCTGCGCTGGAA
GCGCGGCGGCGACAGCGACAGCCTGATGATTCCCAACGCCGACCACCGCGCCGCCCTCGCCCAGTTGCTGCC
GATGGTGCAGAACGCCGCGGGCGGCAAGCTCCACGGCATCGGCCACCGGGTGGTGCATGGCGGCGAGCTGTT
CACCCATGCCACGCGCATCGACGACCGGGTGGTCGAGGCGATCCGGGCCACCGCGCCGCTGGCGCCGCTGCA
CAACCCGGCCAACCTGCAAGGCATCGAGGCAGCGATGACGCTGTTTCCAAAGCTGCCCCACGTCGCCGTGTT
CGACACCGCCTTCCACCAGAGCCTGCCGGAGCACGCCTACCGCTACGCCCTGCCGGAAGCCCTCTACCGCGA
GCATGGCGTACGCCGCTACGGCTTCCACGGCACCAGCCACCGCTACGTCAGCCACCGCGCCGCGGAAATGGC
CGGGTTGGCGGTCGGCGACAGCAGTTGGCTCAGCGCCCACCTTGGCAATGGCAGCTCGACCTGCGCCATCGT
CAACGGCCAGAGCCTCGACACCAGCATGGGCCTGACCCCGCTGGAAGGCCTGGTAATGGGCACCCGCAGCGG
CGACGTCGACCCCAACCTGCACAGCCACCTGGCGCGGACCCTGGGCTGGAGCCTGGAGCGCATCGACTCGAT
GCTGAACAACGAAAGCGGCCTGCTCGGCCTCTCCGACCTGTCCAACGACATGCGCACCCTGGAGCAGGAGCG
CGAGCAGGGCCACCCCGGCGCGGCCCTGGCGATCGAGGTGTTCTGCTACCGCCTGGCCAAGTCCCTGGCGGC
GATGAGCTGCGCCCTGCCGCAACTGGACGGGGTGATCTTCACCGGTGGCATCGGCGAGAACTCGCCGCTGGT
GCGCGCCAAGACCGCCGCCCACCTGCGGCTGTTCGACCTGCGCCTCGACCAGGAGGCCAACGCCCGCTGCGT
GCGCGGCGTCGCCGGGCCGATCCAGGCCGCGGGGCATCCGCGGGTACTGGTGATCCCGACCAACGAAGAGCG
GCAGATCGCCCTCGACACGCTGGCCCTGCTCGACTGAACTGGATCGACGCCCCCGCCCAACCAGGCGGCGTG
GCCAAACGCACGGCTTAA
Translation:
MAILNTCATNRPGNRAPGSLTKTSGTDSSAANFAAAGVPGKKKSRPRSSDALTQHTGDQLRQFVDQVRPGQR
GPLPVSPARPRRAPGQPRCGAALEARRRQRQPDDSQRRPPRRPRPVAADGAERRGRQAPRHRPPGGAWRRAV
HPCHAHRRPGGRGDPGHRAAGAAAQPGQPARHRGSDDAVSKAAPRRRVRHRLPPEPAGARLPLRPAGSPLPR
AWRTPLRLPRHQPPLRQPPRRGNGRVGGRRQQLAQRPPWQWQLDLRHRQRPEPRHQHGPDPAGRPGNGHPQR
RRRPQPAQPPGADPGLEPGAHRLDAEQRKRPARPLRPVQRHAHPGAGARAGPPRRGPGDRGVLLPPGQVPGG
DELRPAATGRGDLHRWHRRELAAGARQDRRPPAAVRPAPRPGGQRPLRARRRRADPGRGASAGTGDPDQRRA
ADRPRHAGPARLNWIDAPAQPGGVAKRTA*
AnnotationID:5551GeneID:5549
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 15:03:42
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15407
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28234
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48551How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 215231Stop: 213846
Length: 1386
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGCCATACTCAACACCTGCGCCACCAACCGCCCTGGCAATCGCGCGCCTGGGTCCTTGACGAAAACGAGC
GGCACAGACAGCTCGGCCGCGAATTTCGCTGCGGCTGGTGTGCCCGGGAAGAAGAAGAGCAGACCAAGGAGC
AGTGATGCCCTCACGCAACATACTGGTGATCAACTGCGGCAGTTCGTCGATCAAGTTCGCCCTGGTCAACGA
GGCCCACTCCCTGTTTCCCCTGCACGGCCTCGCCGAGCGCCTGGGCAGCCGCGATGCGGTGCTGCGCTGGAA
GCGCGGCGGCGACAGCGACAGCCTGATGATTCCCAACGCCGACCACCGCGCCGCCCTCGCCCAGTTGCTGCC
GATGGTGCAGAACGCCGCGGGCGGCAAGCTCCACGGCATCGGCCACCGGGTGGTGCATGGCGGCGAGCTGTT
CACCCATGCCACGCGCATCGACGACCGGGTGGTCGAGGCGATCCGGGCCACCGCGCCGCTGGCGCCGCTGCA
CAACCCGGCCAACCTGCAAGGCATCGAGGCAGCGATGACGCTGTTTCCAAAGCTGCCCCACGTCGCCGTGTT
CGACACCGCCTTCCACCAGAGCCTGCCGGAGCACGCCTACCGCTACGCCCTGCCGGAAGCCCTCTACCGCGA
GCATGGCGTACGCCGCTACGGCTTCCACGGCACCAGCCACCGCTACGTCAGCCACCGCGCCGCGGAAATGGC
CGGGTTGGCGGTCGGCGACAGCAGTTGGCTCAGCGCCCACCTTGGCAATGGCAGCTCGACCTGCGCCATCGT
CAACGGCCAGAGCCTCGACACCAGCATGGGCCTGACCCCGCTGGAAGGCCTGGTAATGGGCACCCGCAGCGG
CGACGTCGACCCCAACCTGCACAGCCACCTGGCGCGGACCCTGGGCTGGAGCCTGGAGCGCATCGACTCGAT
GCTGAACAACGAAAGCGGCCTGCTCGGCCTCTCCGACCTGTCCAACGACATGCGCACCCTGGAGCAGGAGCG
CGAGCAGGGCCACCCCGGCGCGGCCCTGGCGATCGAGGTGTTCTGCTACCGCCTGGCCAAGTCCCTGGCGGC
GATGAGCTGCGCCCTGCCGCAACTGGACGGGGTGATCTTCACCGGTGGCATCGGCGAGAACTCGCCGCTGGT
GCGCGCCAAGACCGCCGCCCACCTGCGGCTGTTCGACCTGCGCCTCGACCAGGAGGCCAACGCCCGCTGCGT
GCGCGGCGTCGCCGGGCCGATCCAGGCCGCGGGGCATCCGCGGGTACTGGTGATCCCGACCAACGAAGAGCG
GCAGATCGCCCTCGACACGCTGGCCCTGCTCGACTGAACTGGATCGACGCCCCCGCCCAACCAGGCGGCGTG
GCCAAACGCACGGCTTAA