ViewGene

Locus Name:
GeneID:
Location:

GeneID:5544
TrivialName: PA14_53930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53930
PAO1 Ortholog Locus:
Sequence Length:1065
Protein Length:354
Start: 4783259
Stop: 4782195
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15]
Identities = 74/258 (28%), Positives = 92/258 (35%), Gaps = 28/258 (10%)
Sequence:
TTGAATTTTTTCTGGATGCTGCAACTCGGTTTCACGGGGTTCGCGGACCGGCGCTCAGGCGCACGCCGGGCT
CGATGCTCAGGCGTTCTTCTTCTGCGCGAAGAGCGCGTCGAGCTTCTGCTCGAAGCTGTGGTAATCGATGCG
ATCGTACAGCTCCATGCGGGTCTGCATGGTATCGATCACGTTCTTCTGGGTGCCGTCGCGACGGATCGCGGT
GTAGACGTTCTCCGCCGCCTTGTTCATGGCGCGGAAGGCCGACAGCGGGTAGAGCACCAGGGACACGTCGGC
GGAGGCCAGTTCGTCGGTGGTGAACAGCGGGGTGGCGCCGAACTCGGTGATGTTGGCCAGCACCGGCACCTT
CACCGCGGCGGCGAACTCCTTGTACATGGCCAGTTCGGTCATGGCTTCCGGGAAGATCATATCGGCGCCGGC
CTCGACGCAGGCGCAGGCGCGGTCGATGGCGGCCTGCAGGCCTTCCACGGCCAGCGCGTCGGTGCGCGCCAT
GATCACGAAGGAGTCGTCGCTGCGGGCATCGACGGCGGCCTTGATGCGGTCGACCATCTCCTGCTGCGAGAC
GATCTCCTTGTTCGGCCGATGGCCGCAGCGCTTGGCGCCGACCTGGTCCTCGATATGCATCGCGGCGGCGCC
GAACTTGATCATCGACTTCACCGTGCGGGCGACGTTGAACGCCGAGGAGCCGAAGCCGGTGTCGACGTCCAC
CAGCAGCGGCAGGTCGCAGACGTCGGTGATCCGGCGCACGTCGGTGAGCACGTCGTCGAGGCCGCTGATGCC
CAGGTCCGGCAGGCCCAGGGAACCGGCAGCGACGCCGCCGCCGGACAGGTAGATGGCCTTGAAGCCGGCGCG
CTTGGCCAGCAGGGCGTGGTTGGCGTTGATGGTGCCGACCACCTGCAGCGGGTGCTCGGTGGCCACGGCTTC
GCGGAAGCGCTGGCCGGGGGTAAGGGACGTCTGGCTCATCACGGACCTCTTAGACGGTGGAGGAAGCGGAGG
CGAGCTTCGCCGGCTGGGGTTCCAGCTGGCGCTCGATATTGCGGCGCGACGCACTGA
Translation:
MNFFWMLQLGFTGFADRRSGARRARCSGVLLLREERVELLLEAVVIDAIVQLHAGLHGIDHVLLGAVATDRG
VDVLRRLVHGAEGRQRVEHQGHVGGGQFVGGEQRGGAELGDVGQHRHLHRGGELLVHGQFGHGFREDHIGAG
LDAGAGAVDGGLQAFHGQRVGARHDHEGVVAAGIDGGLDAVDHLLLRDDLLVRPMAAALGADLVLDMHRGGA
ELDHRLHRAGDVERRGAEAGVDVHQQRQVADVGDPAHVGEHVVEAADAQVRQAQGTGSDAAAGQVDGLEAGA
LGQQGVVGVDGADHLQRVLGGHGFAEALAGGKGRLAHHGPLRRWRKRRRASPAGVPAGARYCGATH*
AnnotationID:5546GeneID:5544
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 15:03:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15403
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28224
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48546How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 170648Stop: 171712
Length: 1065
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGAATTTTTTCTGGATGCTGCAACTCGGTTTCACGGGGTTCGCGGACCGGCGCTCAGGCGCACGCCGGGCT
CGATGCTCAGGCGTTCTTCTTCTGCGCGAAGAGCGCGTCGAGCTTCTGCTCGAAGCTGTGGTAATCGATGCG
ATCGTACAGCTCCATGCGGGTCTGCATGGTATCGATCACGTTCTTCTGGGTGCCGTCGCGACGGATCGCGGT
GTAGACGTTCTCCGCCGCCTTGTTCATGGCGCGGAAGGCCGACAGCGGGTAGAGCACCAGGGACACGTCGGC
GGAGGCCAGTTCGTCGGTGGTGAACAGCGGGGTGGCGCCGAACTCGGTGATGTTGGCCAGCACCGGCACCTT
CACCGCGGCGGCGAACTCCTTGTACATGGCCAGTTCGGTCATGGCTTCCGGGAAGATCATATCGGCGCCGGC
CTCGACGCAGGCGCAGGCGCGGTCGATGGCGGCCTGCAGGCCTTCCACGGCCAGCGCGTCGGTGCGCGCCAT
GATCACGAAGGAGTCGTCGCTGCGGGCATCGACGGCGGCCTTGATGCGGTCGACCATCTCCTGCTGCGAGAC
GATCTCCTTGTTCGGCCGATGGCCGCAGCGCTTGGCGCCGACCTGGTCCTCGATATGCATCGCGGCGGCGCC
GAACTTGATCATCGACTTCACCGTGCGGGCGACGTTGAACGCCGAGGAGCCGAAGCCGGTGTCGACGTCCAC
CAGCAGCGGCAGGTCGCAGACGTCGGTGATCCGGCGCACGTCGGTGAGCACGTCGTCGAGGCCGCTGATGCC
CAGGTCCGGCAGGCCCAGGGAACCGGCAGCGACGCCGCCGCCGGACAGGTAGATGGCCTTGAAGCCGGCGCG
CTTGGCCAGCAGGGCGTGGTTGGCGTTGATGGTGCCGACCACCTGCAGCGGGTGCTCGGTGGCCACGGCTTC
GCGGAAGCGCTGGCCGGGGGTAAGGGACGTCTGGCTCATCACGGACCTCTTAGACGGTGGAGGAAGCGGAGG
CGAGCTTCGCCGGCTGGGGTTCCAGCTGGCGCTCGATATTGCGGCGCGACGCACTGA